Larimichthys crocea (large yellow croaker): 104933377
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Entry
104933377 CDS
T04659
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04382
Cornified envelope formation
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04518
Integrin signaling
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104933377
04518 Integrin signaling
104933377
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104933377
09142 Cell motility
04820 Cytoskeleton in muscle cells
104933377
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104933377
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104933377
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104933377
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104933377
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104933377
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104933377
NCBI-ProteinID:
XP_027135955
LinkDB
All DBs
Position
VII:28985220..29011143
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AA seq
1663 aa
AA seq
DB search
MLLTSCSAPCSYTWLWCLLMILAAPPAALAGDHTEPCAGRDCSTCQCFPAKGARGSPGPL
GRQGPDGPPGFPGPQGPPGEKGWRGGEGPTGAAGLKGGSGSIGVPGFLGLDGVPGHPGPA
GGPGFPGLDGCNGTKGDRGEPGYPGEYGRNGELGMPGLKGFPGDPAVFFIQYPGLPGDPG
LGGLTGLKGDPGFPGLVGDQGPSGPDGNNGLPGLPGSRGPPGEKGRSLAGQKGDEGDQGL
QGPPGPFEYVDPPEDLYIKGEKGPRGPTGPCGVQGLPGLDALPGIKGEKGIPGFPGPRGI
TGYPGLTGVKGFKGIQGSPGLPGLIGREGPKGMMGDPGAKGLPQVLDVTHIGDTGKPGAP
GQRGPPGNMGVMGMHGPKGEPGVSIPGPAGVVGLRGLPGSKGNKGDPGEILKEGPTPGEP
GKPGQPGPKGLKGGPGIPGTYCLPGAPGESGEPGELGPPGAQGFLGYKGSPGDCSCGPPV
VLRGSPGLVGDPGSQGVPGIPGPPGLRGEKGLPGDAGGPGLPGLHGIPGVKGFKGRKGDF
VVVEIKGEKGNMGQQGLAGRLGSPGRRGFNGPPGDPGEPGPQGESFPSSTGDRGFPGSLG
PKGLPGPSGPTGPGVVGAIGLRGAPGEPGLPGVPGSPGPQGVKGDTLPCLPRNPGSPGGK
GDTGDPGFTGFPGPSGFRGVTGPEGAKGDKGFSGVPGPPGQQGPQGLIGDPGEEGPEGLS
YDGDPGSPGLPGSSGLRGPAGESDVGPPGPIGFPGPLGAQGPKGVPGPNGNDGLPGVLGL
SGGQGLQGQRGKDGAPGKPGSTGPTPDYCDAGKPGPSGLLGPQGPIGPPGFLGLKGDIGE
EGLPGFGPQGPEGKPGIAGFPGKPGPQGLAGGTGDPGLPGPQGPKGPMGPYGEGGEPGAP
GLSGATGAPGWTGERGDNGQDGSPGCKGVKGQKGFKGAQGLSGDTVPIIIKGQKGEPGPP
GIDGFTGPPGRKGVRGAAGKPGSPGTNGPPGIVGPPGPSGRYGIPGIPGPPGRPGPSGFI
GFPGQPGNPGDIGCPGPPGIPGQKGCTGHRGDKGDSLSCSGPRGDKGPKGDMGTLGPTGP
QGDPGRPGFIGAPGQKGCKGDPGFPGDPGPPGVEGPSGPRGLSGRPGFPGNAGPDGPPGP
QGCQGLQGPPGPLGLHGLDGLKGVKGDIGTRGLGKQGPQGCNGIPGDKGPPGPPGPKGVS
QPGPPGPRGATGPKGPPGASGPSGNPGQDCNCPVVGPPGYPGCRGPDGDPGCPGDMGDPG
LNPPVPGDEGDNGNMGCQGPDGPKGLQGPLGCPGINGKPGEKGMRGALGLMGLPGNRGPV
GCTGPSGPPGQKGPAGLVGPKGEKGRVYPCVNPPPSQKGAPGAPGPPGQPGPRGLPGEIG
YKGPKGKKGDFGALGPIGREGPPGPNGDKGQPGLPGEMGVVGAKGDPGPMGDRGHPGQEK
RLNSGFLLVLHSQSSRVPTCPLRMKVLWDGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFASCNMGTCSYASRNDKSYWLSTMAALPSTPVGGAAIADHISRCVVCEAPSSPVALHSQ
TSILPDCPPSWKSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRTQPFVECQGPRGTC
HYFANIYSFWLTSMEMTTSTFTMLTEVQQQKENIGRCKVCMRL
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctccgccccctgcagctacacctggctctggtgcctcctgatg
atcctggccgctcctccagcagctctcgcgggcgaccacacagagccttgcgctggtcgg
gactgctccacctgtcagtgtttcccagccaaaggagcgaggggttctccaggtcctcta
gggcggcagggccctgatgggcccccaggctttccaggccctcaggggcctccaggagag
aagggctggagaggaggcgaagggccgacaggagctgcaggactgaaaggaggatcggga
agtatcggtgttcctggttttctgggtttggatggagtcccgggtcacccgggtcctgct
ggaggtcctggttttccaggtctggacggatgtaacggaaccaaaggagacagaggcgaa
ccaggatatcctggagaatacggtcgcaatggagaactgggtatgccaggactgaaggga
ttcccaggagatccagcggtcttcttcatacagtaccctggattacctggagaccccggg
ctgggtggactcactggtctgaagggtgacccgggtttcccgggtctggtgggagatcag
ggtccttcaggaccagatgggaacaacggtctccctggtctgccaggttccaggggccca
cctggagaaaaaggacgatccctcgccggacagaaaggagacgagggggatcagggtctt
caggggcctccagggccgtttgagtacgtcgaccctccagaagacctgtacatcaaagga
gagaagggtcctcgaggtcctacaggtccctgtggagttcaaggacttccgggtttggat
gctctcccggggatcaaaggagagaaggggattcctggatttcctggacccagagggatt
actggataccccgggctgactggagtgaaaggcttcaaggggattcaaggaagtccaggt
cttccaggtctgattggacgagaaggccctaagggcatgatgggagatccaggtgctaaa
ggccttcctcaggtcttagatgtcacacacataggggacactggaaaacccggggccccc
ggccagagaggccctccaggaaacatgggtgtgatgggaatgcacggccccaaaggagag
cctggcgtatccatacctggaccagcaggtgtcgtgggactgaggggactcccaggatcc
aaagggaataaaggagatccgggtgagatacttaaagaagggcccacacctggagaacct
ggaaaaccaggacaacctggacccaaaggactgaaaggagggccaggaattccaggtacc
tactgtctacctggggccccaggagagtcgggagagccaggtgaactggggcccccgggt
gcccagggcttcctggggtataaaggtagtcctggcgactgctcttgtggccccccagtt
gtattgaggggtagccctggccttgtaggtgaccctggatctcaaggggttccaggaatc
ccagggcctccaggactgagaggagagaaaggtttacctggagatgcaggagggccggga
ctgccaggtctgcatggaattccaggtgtcaaagggttcaaaggtcggaagggagatttt
gttgtggtggaaattaaaggtgagaaaggaaacatgggccagcagggcctggcaggtaga
ctaggatccccagggagaagaggattcaacgggcccccgggagaccctggagaacccgga
ccccagggtgaaagtttccctagttccactggagacagaggcttcccagggtccttaggg
ccaaaaggactaccaggaccttcaggccccacagggccaggtgtagtcggggcaatagga
cttcgaggggccccaggagaaccaggacttccgggagttcccggttccccagggccgcag
ggggttaaaggtgacactctgccttgtttgcccagaaaccctggttctccaggagggaag
ggagacactggagatccaggtttcacagggttcccaggtccttcaggtttccgaggtgtt
actggacctgaaggagctaaaggagacaaaggattttctggagttcctggaccacctgga
caacaaggacctcaaggtcttattggagatcccggagaagaaggaccggaaggcttgagt
tatgatggagatccaggttctccggggctcccaggatcttctggactgaggggtccagca
ggagaatcagatgttggacctccaggacccattggcttcccaggaccactgggtgctcag
ggacctaaaggagttcctggccctaatggcaatgacggactaccaggagtcctgggtctg
tccgggggccaaggattgcagggccagagaggaaaggatggggccccaggtaaacctggc
tccactgggcccacacctgactactgtgatgcaggaaaacctggtcccagtggattactt
ggtcctcagggaccgattggacccccaggttttttggggctgaaaggtgacatcggggag
gagggtcttccaggttttggcccacaaggccctgaaggtaaaccaggcattgccggtttc
cctgggaaaccagggccacagggtcttgctggtggcactggagacccaggactaccaggg
cctcagggtccgaaaggtccgatggggccctacggtgagggtggagagccaggggcccct
ggactctcaggggccactggagcccctgggtggacgggggagagaggggacaacggacaa
gatggaagtccaggctgtaaaggagtaaaaggacagaaaggctttaagggggcccagggg
ctttcaggagatactgttcctatcatcatcaaaggacaaaaaggagaacctggacctcct
ggcatcgatggctttactggaccaccaggacgtaaaggtgtgcgaggagctgctggtaag
ccaggttctccaggtaccaatggaccacctggcattgtaggtcccccaggaccttcaggg
cgctacggcataccaggaattccaggaccacctggtcgtccaggaccttcaggattcatc
ggctttcccggacaacccggaaacccaggtgatataggatgtccggggccacctgggatt
cctggtcagaaaggatgtactggacacagaggtgataaaggagactctctcagttgttct
ggtccacgtggagacaaggggcctaaaggagacatggggaccttaggacccactggacct
caaggggaccctggacgacccggtttcattggggctccaggacagaaaggttgcaaagga
gatccaggctttccaggggacccgggtccaccaggtgtggaaggcccctcaggtccaaga
ggtctttcaggtcgtcctggttttcccggtaatgcgggtcctgatggtcctccaggaccg
cagggttgtcagggactccaaggtcctcctggaccactgggacttcatggactggatgga
ctgaaaggggtgaagggggacatagggaccagaggtctaggtaagcagggtcctcaaggt
tgtaatggtattccaggggacaaaggtcctccaggacctccagggccaaaaggtgtatcc
cagcccggcccaccaggacccagaggcgcgacaggacccaaaggccctccaggtgcgagt
ggaccttcaggcaacccaggacaggactgtaactgtccagtcgtagggcctcccggatat
cctggttgtcgtggcccagatggagatccagggtgtcctggtgacatgggggatccaggt
ctgaaccctccagtacctggagatgaaggagacaacgggaacatggggtgccaggggcca
gacggcccaaagggacttcaagggcctctaggctgtccaggcatcaacggaaaaccagga
gagaaagggatgcggggggctctaggtctgatgggactacctggtaatcggggtccagta
ggctgtactggtcccagtgggcccccaggacaaaaggggcctgcaggactagtgggtcca
aagggggaaaaaggacgagtctacccttgtgtcaaccctcctcctagtcaaaaaggagca
ccaggagcccctggcccccccggtcagcctggaccccgtggcctcccgggagaaatcggc
tataaaggacccaaaggaaagaagggggactttggggctctgggaccaattggccgtgag
ggtcccccaggtccaaatggagacaaaggacagcctggtctgccgggtgagatgggagta
gtaggagccaaaggtgatcctggtccaatgggagaccgtgggcatcccggacaagaaaaa
cggttaaactctggcttcctgttggtgttgcacagccaatcaagtagagttcccacctgt
ccactaagaatgaaggtcctgtgggatggatacagtctgctgtacctggagggtcaggag
aaggcccacactcaggacctgggtcaggcagggtcgtgcatgcgggtcttttccaccatg
ccattcgcctcctgtaacatgggaacctgctcttacgccagtcgtaacgataaatcctat
tggctgtcgacaatggcggctctccccagtactccggtgggcggagccgccatcgcagac
cacatcagccgctgcgtggtctgcgaagccccctcctcacccgtcgcactgcacagccag
acctctatcctgccagactgcccccccagctggaaaagcctgtggaccggatactctttc
ctcatgcacacaggtgcaggtgatgagggcggcggccagtctctgacatcatcaggaagc
tgtctgacagacttcaggacccagcccttcgtggagtgtcaggggcctcgaggaacctgc
cactacttcgccaacatctacagcttctggctgaccagcatggagatgaccacgtcaacc
ttcaccatgctgaccgaggtccagcagcagaaggagaacatcgggaggtgcaaagtttgc
atgaggctgtga
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integrated database retrieval system
