Larimichthys crocea (large yellow croaker): 104933377
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Entry
104933377 CDS
T04659
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104933377
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104933377
09142 Cell motility
04820 Cytoskeleton in muscle cells
104933377
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104933377
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104933377
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104933377
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104933377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104933377
NCBI-ProteinID:
XP_027135955
LinkDB
All DBs
Position
VII:28985220..29011143
Genome browser
AA seq
1663 aa
AA seq
DB search
MLLTSCSAPCSYTWLWCLLMILAAPPAALAGDHTEPCAGRDCSTCQCFPAKGARGSPGPL
GRQGPDGPPGFPGPQGPPGEKGWRGGEGPTGAAGLKGGSGSIGVPGFLGLDGVPGHPGPA
GGPGFPGLDGCNGTKGDRGEPGYPGEYGRNGELGMPGLKGFPGDPAVFFIQYPGLPGDPG
LGGLTGLKGDPGFPGLVGDQGPSGPDGNNGLPGLPGSRGPPGEKGRSLAGQKGDEGDQGL
QGPPGPFEYVDPPEDLYIKGEKGPRGPTGPCGVQGLPGLDALPGIKGEKGIPGFPGPRGI
TGYPGLTGVKGFKGIQGSPGLPGLIGREGPKGMMGDPGAKGLPQVLDVTHIGDTGKPGAP
GQRGPPGNMGVMGMHGPKGEPGVSIPGPAGVVGLRGLPGSKGNKGDPGEILKEGPTPGEP
GKPGQPGPKGLKGGPGIPGTYCLPGAPGESGEPGELGPPGAQGFLGYKGSPGDCSCGPPV
VLRGSPGLVGDPGSQGVPGIPGPPGLRGEKGLPGDAGGPGLPGLHGIPGVKGFKGRKGDF
VVVEIKGEKGNMGQQGLAGRLGSPGRRGFNGPPGDPGEPGPQGESFPSSTGDRGFPGSLG
PKGLPGPSGPTGPGVVGAIGLRGAPGEPGLPGVPGSPGPQGVKGDTLPCLPRNPGSPGGK
GDTGDPGFTGFPGPSGFRGVTGPEGAKGDKGFSGVPGPPGQQGPQGLIGDPGEEGPEGLS
YDGDPGSPGLPGSSGLRGPAGESDVGPPGPIGFPGPLGAQGPKGVPGPNGNDGLPGVLGL
SGGQGLQGQRGKDGAPGKPGSTGPTPDYCDAGKPGPSGLLGPQGPIGPPGFLGLKGDIGE
EGLPGFGPQGPEGKPGIAGFPGKPGPQGLAGGTGDPGLPGPQGPKGPMGPYGEGGEPGAP
GLSGATGAPGWTGERGDNGQDGSPGCKGVKGQKGFKGAQGLSGDTVPIIIKGQKGEPGPP
GIDGFTGPPGRKGVRGAAGKPGSPGTNGPPGIVGPPGPSGRYGIPGIPGPPGRPGPSGFI
GFPGQPGNPGDIGCPGPPGIPGQKGCTGHRGDKGDSLSCSGPRGDKGPKGDMGTLGPTGP
QGDPGRPGFIGAPGQKGCKGDPGFPGDPGPPGVEGPSGPRGLSGRPGFPGNAGPDGPPGP
QGCQGLQGPPGPLGLHGLDGLKGVKGDIGTRGLGKQGPQGCNGIPGDKGPPGPPGPKGVS
QPGPPGPRGATGPKGPPGASGPSGNPGQDCNCPVVGPPGYPGCRGPDGDPGCPGDMGDPG
LNPPVPGDEGDNGNMGCQGPDGPKGLQGPLGCPGINGKPGEKGMRGALGLMGLPGNRGPV
GCTGPSGPPGQKGPAGLVGPKGEKGRVYPCVNPPPSQKGAPGAPGPPGQPGPRGLPGEIG
YKGPKGKKGDFGALGPIGREGPPGPNGDKGQPGLPGEMGVVGAKGDPGPMGDRGHPGQEK
RLNSGFLLVLHSQSSRVPTCPLRMKVLWDGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFASCNMGTCSYASRNDKSYWLSTMAALPSTPVGGAAIADHISRCVVCEAPSSPVALHSQ
TSILPDCPPSWKSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRTQPFVECQGPRGTC
HYFANIYSFWLTSMEMTTSTFTMLTEVQQQKENIGRCKVCMRL
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctccgccccctgcagctacacctggctctggtgcctcctgatg
atcctggccgctcctccagcagctctcgcgggcgaccacacagagccttgcgctggtcgg
gactgctccacctgtcagtgtttcccagccaaaggagcgaggggttctccaggtcctcta
gggcggcagggccctgatgggcccccaggctttccaggccctcaggggcctccaggagag
aagggctggagaggaggcgaagggccgacaggagctgcaggactgaaaggaggatcggga
agtatcggtgttcctggttttctgggtttggatggagtcccgggtcacccgggtcctgct
ggaggtcctggttttccaggtctggacggatgtaacggaaccaaaggagacagaggcgaa
ccaggatatcctggagaatacggtcgcaatggagaactgggtatgccaggactgaaggga
ttcccaggagatccagcggtcttcttcatacagtaccctggattacctggagaccccggg
ctgggtggactcactggtctgaagggtgacccgggtttcccgggtctggtgggagatcag
ggtccttcaggaccagatgggaacaacggtctccctggtctgccaggttccaggggccca
cctggagaaaaaggacgatccctcgccggacagaaaggagacgagggggatcagggtctt
caggggcctccagggccgtttgagtacgtcgaccctccagaagacctgtacatcaaagga
gagaagggtcctcgaggtcctacaggtccctgtggagttcaaggacttccgggtttggat
gctctcccggggatcaaaggagagaaggggattcctggatttcctggacccagagggatt
actggataccccgggctgactggagtgaaaggcttcaaggggattcaaggaagtccaggt
cttccaggtctgattggacgagaaggccctaagggcatgatgggagatccaggtgctaaa
ggccttcctcaggtcttagatgtcacacacataggggacactggaaaacccggggccccc
ggccagagaggccctccaggaaacatgggtgtgatgggaatgcacggccccaaaggagag
cctggcgtatccatacctggaccagcaggtgtcgtgggactgaggggactcccaggatcc
aaagggaataaaggagatccgggtgagatacttaaagaagggcccacacctggagaacct
ggaaaaccaggacaacctggacccaaaggactgaaaggagggccaggaattccaggtacc
tactgtctacctggggccccaggagagtcgggagagccaggtgaactggggcccccgggt
gcccagggcttcctggggtataaaggtagtcctggcgactgctcttgtggccccccagtt
gtattgaggggtagccctggccttgtaggtgaccctggatctcaaggggttccaggaatc
ccagggcctccaggactgagaggagagaaaggtttacctggagatgcaggagggccggga
ctgccaggtctgcatggaattccaggtgtcaaagggttcaaaggtcggaagggagatttt
gttgtggtggaaattaaaggtgagaaaggaaacatgggccagcagggcctggcaggtaga
ctaggatccccagggagaagaggattcaacgggcccccgggagaccctggagaacccgga
ccccagggtgaaagtttccctagttccactggagacagaggcttcccagggtccttaggg
ccaaaaggactaccaggaccttcaggccccacagggccaggtgtagtcggggcaatagga
cttcgaggggccccaggagaaccaggacttccgggagttcccggttccccagggccgcag
ggggttaaaggtgacactctgccttgtttgcccagaaaccctggttctccaggagggaag
ggagacactggagatccaggtttcacagggttcccaggtccttcaggtttccgaggtgtt
actggacctgaaggagctaaaggagacaaaggattttctggagttcctggaccacctgga
caacaaggacctcaaggtcttattggagatcccggagaagaaggaccggaaggcttgagt
tatgatggagatccaggttctccggggctcccaggatcttctggactgaggggtccagca
ggagaatcagatgttggacctccaggacccattggcttcccaggaccactgggtgctcag
ggacctaaaggagttcctggccctaatggcaatgacggactaccaggagtcctgggtctg
tccgggggccaaggattgcagggccagagaggaaaggatggggccccaggtaaacctggc
tccactgggcccacacctgactactgtgatgcaggaaaacctggtcccagtggattactt
ggtcctcagggaccgattggacccccaggttttttggggctgaaaggtgacatcggggag
gagggtcttccaggttttggcccacaaggccctgaaggtaaaccaggcattgccggtttc
cctgggaaaccagggccacagggtcttgctggtggcactggagacccaggactaccaggg
cctcagggtccgaaaggtccgatggggccctacggtgagggtggagagccaggggcccct
ggactctcaggggccactggagcccctgggtggacgggggagagaggggacaacggacaa
gatggaagtccaggctgtaaaggagtaaaaggacagaaaggctttaagggggcccagggg
ctttcaggagatactgttcctatcatcatcaaaggacaaaaaggagaacctggacctcct
ggcatcgatggctttactggaccaccaggacgtaaaggtgtgcgaggagctgctggtaag
ccaggttctccaggtaccaatggaccacctggcattgtaggtcccccaggaccttcaggg
cgctacggcataccaggaattccaggaccacctggtcgtccaggaccttcaggattcatc
ggctttcccggacaacccggaaacccaggtgatataggatgtccggggccacctgggatt
cctggtcagaaaggatgtactggacacagaggtgataaaggagactctctcagttgttct
ggtccacgtggagacaaggggcctaaaggagacatggggaccttaggacccactggacct
caaggggaccctggacgacccggtttcattggggctccaggacagaaaggttgcaaagga
gatccaggctttccaggggacccgggtccaccaggtgtggaaggcccctcaggtccaaga
ggtctttcaggtcgtcctggttttcccggtaatgcgggtcctgatggtcctccaggaccg
cagggttgtcagggactccaaggtcctcctggaccactgggacttcatggactggatgga
ctgaaaggggtgaagggggacatagggaccagaggtctaggtaagcagggtcctcaaggt
tgtaatggtattccaggggacaaaggtcctccaggacctccagggccaaaaggtgtatcc
cagcccggcccaccaggacccagaggcgcgacaggacccaaaggccctccaggtgcgagt
ggaccttcaggcaacccaggacaggactgtaactgtccagtcgtagggcctcccggatat
cctggttgtcgtggcccagatggagatccagggtgtcctggtgacatgggggatccaggt
ctgaaccctccagtacctggagatgaaggagacaacgggaacatggggtgccaggggcca
gacggcccaaagggacttcaagggcctctaggctgtccaggcatcaacggaaaaccagga
gagaaagggatgcggggggctctaggtctgatgggactacctggtaatcggggtccagta
ggctgtactggtcccagtgggcccccaggacaaaaggggcctgcaggactagtgggtcca
aagggggaaaaaggacgagtctacccttgtgtcaaccctcctcctagtcaaaaaggagca
ccaggagcccctggcccccccggtcagcctggaccccgtggcctcccgggagaaatcggc
tataaaggacccaaaggaaagaagggggactttggggctctgggaccaattggccgtgag
ggtcccccaggtccaaatggagacaaaggacagcctggtctgccgggtgagatgggagta
gtaggagccaaaggtgatcctggtccaatgggagaccgtgggcatcccggacaagaaaaa
cggttaaactctggcttcctgttggtgttgcacagccaatcaagtagagttcccacctgt
ccactaagaatgaaggtcctgtgggatggatacagtctgctgtacctggagggtcaggag
aaggcccacactcaggacctgggtcaggcagggtcgtgcatgcgggtcttttccaccatg
ccattcgcctcctgtaacatgggaacctgctcttacgccagtcgtaacgataaatcctat
tggctgtcgacaatggcggctctccccagtactccggtgggcggagccgccatcgcagac
cacatcagccgctgcgtggtctgcgaagccccctcctcacccgtcgcactgcacagccag
acctctatcctgccagactgcccccccagctggaaaagcctgtggaccggatactctttc
ctcatgcacacaggtgcaggtgatgagggcggcggccagtctctgacatcatcaggaagc
tgtctgacagacttcaggacccagcccttcgtggagtgtcaggggcctcgaggaacctgc
cactacttcgccaacatctacagcttctggctgaccagcatggagatgaccacgtcaacc
ttcaccatgctgaccgaggtccagcagcagaaggagaacatcgggaggtgcaaagtttgc
atgaggctgtga
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