Larimichthys crocea (large yellow croaker): 104933737
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Entry
104933737 CDS
T04659
Name
(RefSeq) transcription intermediary factor 1-alpha isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lco01001
]
104933737
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104933737
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104933737
Protein kinases [BR:
lco01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
104933737
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
104933737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4_2
zf-C3HC4
PHD-1st_NSD
PML_CC
DUF7615
FemAB_like
DUF5054
ParB
Motif
Other DBs
NCBI-GeneID:
104933737
NCBI-ProteinID:
XP_019134499
LinkDB
All DBs
Position
XX:complement(12821461..12830851)
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AA seq
1080 aa
AA seq
DB search
MDESGDNVDNDDIVIIVENEAESLPAEEERQKQQGTFGLMDTCPICKLSFHNREPKLLPC
LHSFCKRCLPTPFRSADPRRDSQGPVEGNKPPPVGAIRCPVCRQECWEMDVLDNFFVKDS
AEVPSSTVEKTSQVCMSCDDNTEATGYCVECVEFLCVTCIEAHQRVKFTRDHTIRQKEEM
SPEAVGISTQKPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDAYRNHKQ
YLENMTQQLQEKRKAIEDVSSCISTGLQQVDENRKSVTNEIKRSICNLIMEINRKGKILV
NQLEALTKDHEVGLKKQQEDINCLSRHLDHVISFTKWATASHSGTALLYCKRLILFQIHY
LMRASCNPSTVPQSSVRFQCRSGFWATNVDLGSLVVERGPGRPPITNHQAGPRAEAPTAA
LSAAQQRQSTLAQLQMQVDKLSQNPHRQPPPNHWSWYQNVRLPVPPGPPPPTRPIHGGSS
PSQGPPNLGQQGRRYGNSHPNPRSPTSSMLHNTGFPPAQSLRDLIHGSSFPPKPMDVLQG
TSRYPQPLSTGAPTQPSLHQRGLTESSFLKRSEPGGSVPSITISIPKPSFPPSAASASAD
KTSALNHITVQVRQNSPLAKPSSSDRGTGTTSWKPTFEAPSAPSAKRRRRTSPGPVIVIK
DEPEDEDEVRFVQSSVGSSLPDSSTGAQSKPRQQLKAPAPAPVPGSESKAGKEQCPQSAG
QPESVKRAEPEEDPNEDWCAVCQNGGELLCCDKCPKVFHLACHIPTLNESPSGEWFCSFC
RDLVSPEMEYDCASRDDPVSEGFPPVDRRRCERLLLRLFCNDFSTDFQQAASPSETRRYK
ELIKTPMDLSIVKRKLESKSREGEGYGSPEGFVTDVRLIFFNCAKYYKIVQATSEVGSAG
LYLEDYFEEQLKQVYPDRVFPGGREEQMIPPLEDEIDEEEEEMMQEGMAPVEDDKPESPA
GKGIPPVEEDLPPDEATAPAEEEKPEPEEKGNDTRDEGTDRKAEATEGSSTPSGEVEQHE
ESPAQEAESSAAADSETKDREAPSSPKEENAHLPTDKTADPPETQEKESAPADTAKEEKG
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaagcggcgacaacgttgacaatgacgacattgttattatcgtggagaacgag
gcggagagtttgcccgccgaggaagagagacagaaacagcaaggcaccttcggactcatg
gacacttgtcccatctgcaagttgagcttccacaacagagagcccaaactcctgccgtgt
ctccactccttctgcaagaggtgtctgccgaccccattcaggagtgctgaccccaggcgt
gactcccagggtccggtggagggcaacaaaccacctccagtgggtgccattcgatgtcca
gtatgcagacaggaatgctgggagatggacgtgttggacaatttcttcgtcaaggactca
gccgaggtgccgagcagcacagtggagaaaaccagccaggtgtgcatgagctgcgacgac
aacacggaggcgacaggttactgcgtggagtgtgtcgagtttctgtgcgtgacgtgcatc
gaggcacaccaaagggtcaagttcaccagagatcacaccatacggcaaaaggaggagatg
tctccagaagcagtaggtatttccacacagaagcctgtgttttgtgacatccacaagcaa
gagccactcaagctattttgtgagacgtgcgaccgactcacctgtcgagactgtcagctg
cttaaacacaaggatcacaactaccagtttttggaggatgcgtacaggaaccacaagcag
tatctggagaacatgacgcagcagctgcaggagaaaagaaaggccatcgaggacgtgtcc
agctgcatcagcaccggacttcagcaagttgacgagaaccggaaatctgtaaccaatgag
ataaagaggtctatctgtaacttgataatggagatcaacaggaagggaaagattctggtc
aaccaacttgaggctctcacgaaggaccatgaggtgggtttgaaaaagcagcaagaggac
atcaactgtctgagcaggcacctagaccacgtcatcagctttactaaatgggctacagcc
agccatagcggaacagctctcctgtactgcaagagactgatcctttttcagatccattac
ctgatgagagcgagctgtaatccctccaccgtccctcaaagttctgtgcgctttcagtgc
cgctctggtttctgggccacgaatgtagacctcggttctctggttgttgaaaggggcccg
gggcggccacccatcaccaaccaccaggcaggtcccagagcagaagcacccaccgcagca
ctctcagcagctcaacagcgacagagtactcttgcccagctccagatgcaggtggacaag
ctttcccagaacccccacagacagccccctcctaaccactggtcctggtaccaaaacgtc
agactcccagtaccacccggccctccacccccaaccagacccatccatggtgggtcctcc
ccttcccaaggccccccaaacttgggccagcaaggacgtagatacggaaactctcacccc
aaccctagaagccccacatcatccatgcttcacaacacaggattcccacctgctcagtct
ctgagagatctgatccatggctccagcttccctcctaaacccatggatgtgttgcagggt
acttcccgctacccacagcctctgtccactggagcacctacacagccatcactacatcag
cggggcctaacagagtcgtccttcctgaagaggagtgagcctggtggatctgtcccctcc
atcaccatctctatccccaaacccagctttcctccaagtgcagcttcagcgtctgcagac
aaaacaagcgcactcaatcatataacggttcaagtaagacagaactctccgctagccaag
ccgtcttcttcagacagaggcacagggacaacgtcatggaagccgacttttgaggctccg
tctgccccctcggctaagcgacgaagaaggacgtcccctggacccgttatcgtcatcaag
gacgaaccagaagatgaggatgaagttcgttttgtgcagtccagtgtaggctccagctta
ccggacagcagcacgggtgctcagtcgaagcctcggcagcagctaaaggcgcctgcccca
gcaccggtgcccggatcagagtccaaagctggaaaagagcagtgccctcagtctgcaggg
cagccagagtctgttaaaagagcagagccggaagaagatcccaacgaggactggtgcgcc
gtctgtcagaacggaggggaactactctgttgtgacaaatgtcccaaagtttttcatctg
gcctgtcacatccccactctgaacgagtcccccagtggcgagtggttctgctcgttctgc
cgagacctcgtctcgcctgagatggagtatgactgcgccagcagggacgaccccgtctct
gaaggattcccacctgttgacagaaggaggtgtgagaggctgctactacgtctgttctgt
aatgacttcagcactgacttccagcaggctgcttccccatcagaaacgaggaggtacaaa
gagctgatcaagaccccgatggatttgtcaatagtgaagcggaaactggagtcgaagtcg
agggaaggtgaaggttacggtagtccggaggggtttgtcacagacgtcaggctcatattt
ttcaactgtgcaaaatactacaagattgtacaggcgacctcagaagtgggcagcgcaggc
ttgtacttggaagactacttcgaggaacagttgaagcaagtctacccagatagagtcttc
cccggagggagggaagaacagatgatccctccattggaggatgagatagacgaagaagag
gaagagatgatgcaggaaggcatggctcccgttgaagacgataaaccggaaagtcctgca
ggaaaaggaatcccccctgtagaagaggacttgcctccggatgaggcgacggccccggcg
gaggaagaaaagccagaaccagaggagaaggggaacgacacaagagatgaggggacggac
agaaaagcagaggccacggagggaagctcgacaccttcaggggaggtagagcagcacgag
gaaagtccagcgcaggaggcagaaagctctgctgctgctgatagtgaaacaaaagacaga
gaagctcccagttccccaaaggaggaaaacgctcacctccccacagacaagactgcagat
ccacctgaaacccaggagaaggagtcagctcctgcagacacagccaaagaggagaagggt
taa
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