Larimichthys crocea (large yellow croaker): 104933971
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Entry
104933971 CDS
T04659
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104933971
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Protocadherins
104933971
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
TMEM154
Cadherin_C_2
ECSCR
Motif
Other DBs
NCBI-GeneID:
104933971
NCBI-ProteinID:
XP_010747861
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Position
I:complement(32115789..32125435)
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AA seq
1238 aa
AA seq
DB search
MGAKMIQTKGNIFSSALLKLLLLVALMHGATGKTLKYKVYEEQKVGTVIARLKEDVAGVL
SKLPSSLTFRFRAMQRGSTSFLSVREEDGEISIATKIDREKLCEKNLNCSIEFDVVTLPT
EYLQLFHVEVEVLDINDNSPHFSRAIVPIEISESASVGTRIPLDGAVDADVGENSLHTYS
LTPNNFFKIDIRTRTDGAKYAELVVMRELDREVQSSYQLQLTASDNGVPPKSGSTLLKIS
ISDSNDNSPAFDEQAYIINLLENSPLGTLIIDLNATDPDEGTNGKIVYSFSSHVSPKILE
TFKINPENGHITLIKKVDYETTASYELDVQAQDLGPNSIPGLCKIVVKVVDVNDNKPEIN
INLMTPGKEEVAYISEGAPVDTFIALVRVDDSDAGLNGEVVCRLHGHGHFRLQKTYEKNY
MILTNVSLDREKRSEYSLTVIAEDRGSPSLSTIKHFTVQVLDENDNPPYFEKSRYEVFKS
ENNSPGAYLMTVVASDPDLGTNGQVTYTIIDALVQGSPISTYVTIDPSNGAIYALRSFDH
EDVSRISFTIQARDGGNPALSTNTTVLLTVLDENDNPPIIHSPSLRNHTAELPVWKYASP
GQLITALKVTDRDAGANGEVSCAIVGGNEDGLFVMDARRCELRTNASLEQAPRDVMEIRV
EVQDRGTSRLSTGALLRLSLQETMDLPPLYPTGSSQAPLDLSLIVIISLVAVCALLLIVM
VMFATARCNREKKDPRHNYNCRVAESSYQNHPKKPARQIHKADITLVPTVNGTLPVRAHP
RSPSASPTPERGTLGSRQSHHSRQSLNSLVTISSNHVPENFALELAHATPPVEQVSQLLS
MLHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYEPGRESPMDRL
LGEGFTEIYAPDGQHRTHAAMRLCTEECRVLGHSDQCWMPPLASPASSSSDYRSNLYIPG
EEARQATDLSQEKIPQPCTDTGPNRNQSFSTFGKDPGGEDGGEEERGEDGEGEARDEDLC
GTTSLLSEMSSVFQRLLPQGLDSYVQVNENQKGTSLSGVGVPMTGSLDRRRGHLPGKSNP
SVHQQGVAAWAANTHFQNPGSSIGPSGHHQGGSYHTLKPSTKLSSQSSSHKGSQAPKNSP
QNSGHTPKPHSTPLLTALVSPTLVQPSPAPVLVPVPLPGPSSKWLPAMEEIPENYEEDDF
DSVLSHLQGKRSDSRHELVDASELVAEINKLLQDVRQS
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcaaaaatgatccaaaccaaaggaaatatattctcttcggcactactcaaacta
ctgcttctggtcgcgcttatgcacggcgccaccggtaagactttgaaatataaagtttat
gaggagcagaaagtgggcactgttattgcacggttaaaggaggatgtcgccggggtttta
tccaaactacccagttccctgacctttcggttccgcgctatgcaacgggggagcacgtcg
ttcctgtctgtccgggaggaggacggggagatcagcattgccaccaaaatcgaccgtgag
aagctttgtgaaaaaaacttgaattgctcgattgaattcgacgtggtcactctcccgacg
gagtacctgcagctgttccatgtggaggtggaagtgttggacattaatgataactccccg
cacttctcccgcgccatcgttcctattgagatctccgagagcgcatccgtggggacgcgc
atcccgctggatggcgccgtggacgcggacgtcggggagaactccttgcacacatactct
ctgacacccaataacttctttaagatcgacatcaggaccaggacagacggggccaagtac
gcagagctggtcgtgatgagggagttggacagggaggtgcagtccagctaccagctgcag
ctcacagcctcggataacggtgtgcctcctaaatctggctccactttgctcaagattagc
atctctgattccaacgacaacagcccagcctttgatgagcaggcctatatcatcaatttg
ctggaaaactctccccttgggactctaatcattgatttaaacgccacagatccagacgag
ggcactaatgggaaaatagtctactctttcagcagccatgtatcgccaaagatcttggaa
acatttaagataaacccagaaaacggccacattacgcttattaaaaaagtggactatgaa
accactgcctcatacgagctagatgttcaggctcaggacttgggcccaaattctattcct
ggcctctgcaaaattgtggtgaaagtggtggatgtgaatgacaacaaaccagagataaac
atcaacctgatgactcctggcaaagaggaagtggcctacatttcagagggtgcccctgtg
gacacttttatagctctggttcgtgttgatgacagtgacgctgggctcaatggtgaagtg
gtgtgtaggcttcacggccacggccactttagactccagaagacctacgagaagaactac
atgatcctcaccaatgtctcactcgacagggagaagaggtcagagtacagtctgacagtc
atagctgaggacaggggctcccctagcctctccaccatcaaacacttcactgttcaggtg
ctggatgaaaacgacaatcctccatattttgaaaagagccgctacgaggtcttcaaatca
gagaacaactcccctggagcatacttaatgactgtggtggcctcagatccagatctgggc
accaatggccaagtcacctacaccatcatagatgctctggtccaagggagccccatctcc
acctatgtcactattgacccttctaatggtgccatctatgccttacgcagctttgatcat
gaagacgtcagccggatctctttcaccattcaggcacgtgacgggggaaaccctgctctg
tcaactaacaccaccgtcctgctgactgttttggatgaaaatgacaacccacccatcatc
cactccccctccctccggaatcacactgccgagttgccagtgtggaagtatgcatcaccg
ggtcagctgatcactgctcttaaagtcacagaccgtgacgctggcgccaatggagaggtg
agctgtgccatcgttggaggcaatgaggatggactgtttgtgatggacgctcggcgatgt
gagctcagaacaaatgccagcctggagcaggcgccaagggatgtgatggagatcagggtg
gaagtgcaggacaggggcaccagtcggctgtctacaggggccctcctcaggctctctctg
caggagactatggaccttccacctctctaccccactggctccagccaagccccactggac
ctctccctcattgtcatcatatctctggttgccgtttgtgctctgctgctaatcgtcatg
gtgatgtttgccactgcccgttgcaatcgtgagaagaaagacccaaggcacaactacaac
tgcagagtggcagagagcagctaccagaaccaccccaaaaagcccgccaggcaaatccac
aaggcagatatcaccctggttccgaccgtcaatgggaccctgcctgtccgtgcccaccca
cgctccccctcagcctcccctacacctgagaggggcaccctgggtagcaggcaaagccat
catagccgccagtccctcaatagcctggtaaccatctcctccaatcatgtgccggagaac
tttgccctggaactggctcacgccacacctcctgtagagcaagtctcacagcttctgtcc
atgctccaccagggccagtaccagccacgaccaagctttagaggcaacaaatacaccagg
agctacagatatgccctgaacgagatggataagttcagtctgaaggacagcggccgtgga
gacagtgaagccggggacagtgattacgagcctggcagggagtcacccatggataggctc
cttggtgagggctttactgagatatatgcccctgatggccagcacagaacgcatgcagct
atgaggctctgcacagaggagtgtcgtgtcctgggtcattcagatcagtgttggatgccc
ccactggcctccccggcgtcttcctcctctgactatcgcagcaacctctacatccctggg
gaagaagcccgccaagccaccgacctctcccaggaaaagatcccacagccctgcactgac
actggtcccaaccggaaccagagcttctccaccttcggcaaggacccgggtggtgaggat
ggtggagaagaggagaggggagaggatggtgagggtgaagccagagatgaagacctgtgt
gggaccacttcattactgtctgagatgagtagtgtgttccagcggttgctaccccagggt
ctggactcgtatgtccaggtcaatgagaaccagaaggggactagcctgagtggagttggt
gtccctatgactggatctttagatcgcaggaggggccatcttcctggcaagtccaacccc
tctgtgcaccagcagggtgtggccgcctgggccgctaacacccacttccagaacccagga
agtagcattggcccatctggccaccaccaaggtggcagttatcataccctgaaacccagc
accaagctcagctcccagagtagcagccacaagggctcgcaggcacccaaaaacagtccc
cagaatagcggccacactcccaaaccccacagcactcccttgctcacagcgctggtcagc
cccactctggtgcagccttccccagccccggtgctagtgccagttccgctccctgggccc
tcctccaaatggctgccggccatggaggagatcccagaaaactatgaggaggacgatttt
gactcagtgctcagccaccttcagggcaaacgcagtgacagccgacatgagctggtggac
gccagtgagctggtagccgagatcaacaaacttttgcaggatgttcggcagagctaa
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