Larimichthys crocea (large yellow croaker): 104934090
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Entry
104934090 CDS
T04659
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lco03041
]
104934090
Spliceosome [BR:
lco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
104934090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_2
TPR_16
TPR_MalT
HrpB1_HrpK
TPR_11
TPR_21
Ras_bdg_2
GAT
Motif
Other DBs
NCBI-GeneID:
104934090
NCBI-ProteinID:
XP_010747973
LinkDB
All DBs
Position
I:28585166..28591759
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AA seq
727 aa
AA seq
DB search
MAAEGSEGMSGNGELDESSAMEASQDPASLPTEMVEMSEENGSTAEAPEPPVGPNPDSFS
MPPAAEDEEGEIPADFERLWKAAHDNPQDFTSWTDLLQYCEQESHVTASRRALEAFLARY
PLCYGYWKKFADLERRAGYNNKAEEVCVQGLQVIPLSVDLWIHFINLLLGTLDMNLPESP
TRIRSVFEDAVHAAGLDFHSDRLWDLYIEWEKEQGNMRNATSVLDRVLRVPTQLYNTHYD
KFKEHLNSHEPKDVLSPEEYEELRTLCRQSQKAERAEQAQEEEAERPPGEEEPATPEGTD
TEELMQKIREQVLIRRDKVYQDNEGEVRKRWHFEDAIKRPYFHVKPLDRLQLRAWHSYLD
WEIAQLNKDTKDPNQDPDQTATEGSEVTAQPQEESEDAVVAHDDYRVRILFERCLIACAL
YEEFWTRYTQYLEAQNVDEARAVFRRACEVHLTYKPNIHMHWATFEERHGDLTEARRVLE
ALEKTLPGLAVVRLRRAALERRAGHLDHSEALLREAVAESKEKPMLHAFYSIKLARLLLK
LGRNPSRARRVLQEALDISPDNDKLHLNLLELEVSGDPWASAEAVQECVTRALAAPLAPH
TKILFSQRGLQFAEDYSNSIQSVLTVYEEHQKLLRELGGTKREAENGDEDSEKLSKSDDG
SAVAVSAQAPPTMPHVPITTPPPPVMGADMTAQTGYGGYSSWYQQPQYGSYGYQNTWNYN
QGYYPPS
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaaggcagtgaggggatgagcggtaacggggagctggacgagtcctcagcc
atggaggcttctcaggatcctgcctcgcttccgaccgagatggtagagatgtcggaagaa
aacggcagtacggccgaggcccccgaacctcccgtaggcccaaaccccgattccttctcc
atgcctccagctgcagaagacgaagagggagaaatacctgcagactttgagcgcctgtgg
aaggccgcccacgacaatcctcaagacttcaccagctggaccgacttgctgcagtactgc
gagcaagagagtcacgtcacagcctcacgcagagcgctagaggccttcctcgctcgctac
ccgctctgctacggctactggaagaaattcgctgatctggagcgccgcgctggatacaac
aacaaagcagaggaggtgtgtgttcagggtttgcaggtaatccctctgagcgtagatctg
tggatccacttcatcaacctgctgctgggaacactggacatgaacctgcccgagtcgccc
acacggattcgaagtgtgtttgaggacgcggttcatgcagcaggtctggacttccactca
gaccgactttgggatctttatattgagtgggagaaggaacaggggaacatgaggaacgca
acaagtgtcctggacagagtcctcagagtccccacccagctctacaacacccactacgac
aagttcaaggaacacctcaacagccacgagcccaaagacgttctctcaccggaggagtac
gaggagctgaggacgttgtgccgtcagagtcagaaggcagagcgtgctgaacaggcccag
gaggaggaggcggagaggccgccgggggaggaggagcccgccacacccgagggcacagac
acagaggaattgatgcagaagatcagggaacaggtgctgatccgcagggacaaagtttac
caggacaacgaaggagaagtccgcaagagatggcactttgaagacgctatcaaacgtccg
tacttccacgtcaagccactcgaccgcctccagctgcgggcctggcactcctacctggac
tgggagatcgctcagctgaacaaggacaccaaagaccccaaccaagatccagaccagaca
gccacagaggggtcagaggtcacagcccaacctcaggaagaatcagaggatgctgtggtt
gcccatgacgactacagggttcgcatcttgtttgagcggtgcctgatcgcctgtgctctg
tacgaggagttctggaccaggtacactcagtacctggaggcgcagaatgtggatgaggct
cgggctgttttcaggcgagcgtgtgaggttcacctgacgtacaaacccaacatccacatg
cactgggccacctttgaggaaaggcatggtgacttaaccgaggcacgacgagtactggaa
gccctggagaaaaccctaccaggattggcggtggtccgtcttcgcagggcggctttagag
agacgagcaggccacctggatcattcagaggccttgctgcgggaggcggtggcagaatcc
aaagagaagcccatgttacacgctttctactccatcaaactggctcgtctgctgctgaaa
ctgggcaggaaccccagcagagcacgcagggttttacaggaggcgctggatatcagtccg
gataatgataaactgcacttgaacctgttggagttggaggtgtcgggcgacccctgggct
tcagctgaggccgtgcaggagtgtgtgacgcgagccctggcagctcccctcgccccacac
accaagatcctcttctcacagagaggcctgcagttcgccgaggactacagcaactcgatc
cagagtgtgctgactgtctatgaggagcatcagaaactgctgagggagctgggtggaaca
aagagagaagcagagaacggggacgaggactcggaaaagctgagcaaaagtgacgacggc
tccgctgttgctgtgtctgcacaagctccacctaccatgccacacgtccccatcaccacg
ccccctccacctgtgatgggcgccgacatgaccgcacagaccggctacgggggatacagc
agctggtaccagcaaccgcagtacggcagctacggttaccagaacacctggaactacaac
cagggttactatcctcctagttaa
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