Larimichthys crocea (large yellow croaker): 104934132
Help
Entry
104934132 CDS
T04659
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lco03009
]
104934132 (ddx56)
Enzymes [BR:
lco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104934132 (ddx56)
Ribosome biogenesis [BR:
lco03009
]
Eukaryotic type
Pre-60S particles
Helicases
104934132 (ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
Motif
Other DBs
NCBI-GeneID:
104934132
NCBI-ProteinID:
XP_019134171
LinkDB
All DBs
Position
IX:13159848..13165871
Genome browser
AA seq
558 aa
AA seq
DB search
MAAERLQFHELGLDDRLLKAIADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY
AVPVIQRILASKQSVREQDVRALILVPTKELGQQVQTMIRQLTAFCSRDVRVADISGKAD
LSAQRPILMEKPDVVVGTPSRVLAHLSAQNLVLHSSLETLVVDEADLLFSFGFEADLKNL
LCHLPKIYQSFLMSATLTEDVQALKELLLHNPVILKLQGSQLPDSSQLQQYSIKCEEEDK
FLLIYTLLRLRLVQGKTLVFVGAVDRCYRLKLFLEQFGIPACVLNSELPVQSRCHIITQF
NQGFYDYIIATDEQSLADPTAASQAPAGKGKKKKATERGGKSKDKEYGVSRGVDFQNVAN
VINFDFPTTVESYIHRVGRTARADNPGTALSFIAHTELGLLSDVEEALTGDHADSALKPY
EFKMEEIEGFRYRCRDAMRSVTKQAVKEARLKEIKQELLNSEKLKTYFEDNPRDLQLLRH
DKDLHPAVIKPHLKNVPEYLVPETLRSTVNMSGRRRRKRKEKPEGVIKTSFKNIQGKNPL
KSFRYTGGRHRKGKAGQS
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagaggcttcagttccacgagctgggcttagacgaccgactgctaaaggcg
attgcagatctgggttggtcccagccgactctgatccaggagaaggccatcccgttggcc
ctggaggggaaagaccttctggctcgagcccggaccggatctggaaagaccgccgcgtac
gccgtccctgtcatccaaaggatcctggcctccaaacagagcgttcgtgagcaagatgtg
cgggctctgatcctggtaccaaccaaagagctgggtcagcaggtccagaccatgatcaga
cagctaacggcgttctgctcgagggacgtccgggtcgccgacatctccggaaaagccgac
ctgtcggcgcagagacccatcttaatggagaagcccgacgtggtcgtggggacgccgtcc
cgcgtgctcgctcacctcagtgcccagaacctggtcctgcattcgtccctcgagacgctg
gtcgtggacgaggctgacctgctcttctcttttggcttcgaggcagatctgaagaacttg
ttgtgtcacttgccgaagatctaccagtcgttcttgatgtcggcgactctcaccgaggat
gttcaggccctgaaggagctgctgctgcacaacccggtgatcctgaagcttcagggctct
cagctccccgacagcagccagctgcagcagtacagcatcaaatgtgaggaggaggacaag
ttcctgctcatctacacgctgctgaggctgcggctggtccagggcaagacgctggtgttc
gtgggagccgtggaccgatgttacagactcaaactgttcctggagcagttcgggattccc
gcctgtgtgctgaactcggagctgcccgtccagtccaggtgtcacatcatcactcagttc
aaccagggattctacgactacatcatcgccacagacgagcagagtttggctgatcccacc
gcggcctctcaggcgcctgcaggcaaagggaagaagaagaaggcgacagagcgaggagga
aagagtaaggacaaagagtacggcgtctccagaggtgtggacttccaaaacgtcgccaac
gtcatcaacttcgatttccccacgaccgtagaatcgtacattcaccgagtgggaagaacg
gcgagagccgacaacccgggcaccgctctgtccttcatcgctcacacggagctcggtttg
ctgtcagatgtggaggaggctctcacaggagatcacgccgactctgccctcaaaccgtac
gagttcaagatggaagagatcgaaggcttcaggtacaggtgcagggacgcgatgcgttca
gtgaccaagcaggcagtaaaagaggccagactgaaggagatcaaacaggagctgctcaat
tcagagaaactcaagacatatttcgaggataaccccagagacctgcagctgctcagacat
gacaaagacctccatcccgccgtcatcaaaccacacctgaagaacgtacccgagtacctc
gttccagagacgctgaggagcaccgtgaatatgtcagggaggaggaggaggaagaggaag
gaaaaacctgaaggagtcatcaagaccagtttcaagaacatccaggggaagaacccactc
aagagtttccggtacaccggagggaggcacagaaaaggcaaagccggccagtcatag
DBGET
integrated database retrieval system
