Larimichthys crocea (large yellow croaker): 104934208
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Entry
104934208 CDS
T04659
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04518
Integrin signaling
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104934208
04518 Integrin signaling
104934208
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104934208
09142 Cell motility
04820 Cytoskeleton in muscle cells
104934208
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104934208
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104934208
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104934208
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104934208
Hyaluronan
Extracellular matrix or blood plasma proteins
104934208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
SPOB_ab
Motif
Other DBs
NCBI-GeneID:
104934208
NCBI-ProteinID:
XP_027139086
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Position
X:complement(13965583..13984332)
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AA seq
783 aa
AA seq
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MIKNETRDTCCSFECTAPGGPKGLIGDPGSKGESGRPGMPGEKGDPGPKGSIGDPGPVGY
SGMKGDRGGRGEKGERGHKGFKGDKGQRGRDGIDGRKGEAGFAGLPGCKGSPGSDGLQGD
PGPKGDPGPYGIKGEKGDPGKDGLSGRPGNYGASGPKGEPGSRGGDGDKGERGDDGPTGP
DGPRGERGTIGEKGVQGSPGNRGPRGDPGDPGPRGEPGREGTPGPNGDPGVKGREGPPGY
RGDEGPSGPEGPKGIRGIKGAPGDRGLIGDRGEDGAPGNGTAGCPGFQGYPGTRGDPGEP
GGKGTPGPKGDDGDPGDPGPDNDIPGTPGRKGAKGHRGPDGNPGPPGPPGPAGTDECEIL
DIIMKLCSCCECKCGSLDLAFIVDSSESIGESNFALAKDFIITVIDRLIKDQQVKFAGNE
SRVSVVQYSGARAQEAVQLGSNAFSLTDFKQKVRDLRWLAEATYTGEALDFALKNTISLM
RQDNRVVLVLTDGRSDTDRDTIPLNILCGQNVRVGGLGVKDYAGRQPNQERLDEMSCKND
PKPGFSFVLDNFAELLDDTFLQNLTTKICQDKKCPSARQRCPISFDESADILVMMDSSAS
VGQKNFETSKTFVRRLAERFLTAEKKRVATVKVAVGQYSRSSRMEQQLTTNLTLLSRRIE
EAAFQNDGTNLLEAMEFAIKNLRGRGDASGGVKKLVLFSDGRSQDITDAGLEKRVREVAE
AGVELFVIAIGTQVNEANLRTLVSKGRREDIISAQRHLFRIGDYPSLLRGVFYQTVSRRV
SKS
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaacgagacaagggatacgtgttgctccttcgaatgcactgctccaggaggg
ccaaagggattgataggagaccctggatccaagggagagtcaggtagaccaggaatgcca
ggagagaaaggagatcctggtcccaagggcagcattggagatcctggtccagttggttac
agtggaatgaagggagaccgtggtggcagaggagaaaagggtgaaagaggacacaaaggc
ttcaagggagacaaaggtcaaaggggaagggatggaattgatggacgcaagggtgaggct
ggtttcgctggtcttcccggctgtaaaggatctcccggatcagatggcctacagggagat
cctggaccaaagggagaccctggtccttatggaataaaaggagaaaaaggagatcctgga
aaagacggcctgtctggaagacctggaaactatggtgcatcgggacctaagggcgagccg
ggctctcgtggaggcgatggggacaaaggagagcgcggtgacgatggccctacaggacca
gatggacctcgcggcgagagaggaactattggagagaaaggggttcaaggttcccccgga
aacagaggtccaagaggagatcccggggaccctggaccccgtggagaaccggggagggag
ggcacacctggtcccaacggagaccctggtgtgaaaggcagagaagggcctcctggctac
agaggagatgaaggaccatctggaccagaaggacccaaaggaatcagaggaatcaaaggc
gctcctggagacagaggcctgattggcgacaggggagaagatggtgccccaggaaatggt
accgcaggttgtcctggcttccagggttatcctgggacccgtggagatcctggtgagcct
ggtggcaagggaacccctggacccaaaggagatgacggagatcccggagatccaggcccc
gataacgacatcccaggaactccaggacgtaaaggagccaaaggtcacagaggacccgac
ggcaatccaggacctcctgggcctcctggaccagcaggaactgatgaatgtgaaattctg
gatatcatcatgaagctctgttcttgttgtgagtgtaagtgtggatctctggacctggcg
ttcattgtggacagctcagagagtattggtgaatcaaactttgctcttgccaaagacttt
atcatcacagtcattgacagactgatcaaagaccagcaagtcaagtttgcaggtaatgag
tccagagtgagtgtagtgcagtacagtggagcaagggcccaagaagctgtccaattggga
tccaacgcttttagcctcaccgacttcaaacagaaagtgagagacttgagatggctggct
gaggccacatacacaggcgaggcccttgatttcgctctaaaaaacacaatcagtctgatg
cggcaagacaaccgagttgttcttgtcctcaccgacggacgttctgatactgatagggac
acgattcccctcaacatcctctgtggtcaaaatgtccgggtgggtggtttaggagtgaag
gactacgcaggtcgtcagcccaaccaggagcggcttgatgaaatgagttgtaagaacgat
cccaaaccaggcttttcctttgttctggacaactttgccgagctgctggatgacactttc
ctgcaaaacctcacaaccaaaatctgtcaagataagaagtgcccgtcggcacgacaaaga
tgtcccatttctttcgatgaaagtgccgatattttggtgatgatggacagctcggcgagt
gtgggccagaagaacttcgagacaagcaagacctttgtccgacgtttggctgagcgtttc
ctgaccgcagagaaaaagagggtcgccactgtcaaagtggccgttggccaatacagccgg
agcagccgcatggagcagcagctaactaccaatttgaccctgctgtctcgtcgcattgaa
gaggcagccttccaaaatgacggcactaatttattagaggccatggagtttgctattaag
aatttacgtggccgtggagacgcatcgggaggtgtaaagaagctggtgctgttctctgac
ggcaggtctcaggatatcactgatgctgggctggagaagcgcgtacgtgaagtggcggaa
gccggggtggagctctttgtcatcgccattggcacccaggtcaatgaggccaacttgcgc
actcttgtgagcaaagggcgtcgggaagacatcatctctgcccagcgccacctgttccgc
atcggagactacccctctctgctcagaggggtcttctaccaaaccgtttcccgtagggtg
tccaagtcctga
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