Larimichthys crocea (large yellow croaker): 104934218
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Entry
104934218 CDS
T04659
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104934218 (pdzrn4)
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104934218 (pdzrn4)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
104934218 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
GRASP55_65
Motif
Other DBs
NCBI-GeneID:
104934218
NCBI-ProteinID:
XP_019115867
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Position
XX:complement(11258045..11292067)
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AA seq
820 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNARDFSKVEHEEAVVEAIRRDPIVVQVLRRTPTRGT
AAVAHNHGGTPQDVCVVDVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHT
MEHEFYECPEYLSNTPAEVERTEEYEYEEVELCRQNSQEKLGLTLCYRTDDEEDTGIYVS
QVEPNSIAARDGRIKEGDRILQINGCEVQDREKAVALLSSEEARSIILLVTRPEMQLEEE
VWLDEEQQELVEELKMEILEERRKQKEHNFDRRDEHQAEEEMTTDTATCSSNNQDKDSGF
GRSTDSPEHQPLLGRLHRRTPAHCLRERWRAEHPHTRRGTVVPQDTQGQRILSKGQGHEG
VVSIRNGGGGVLGLENRFQQLLELKCQIRNGGECGVYSIRHSIECSLTEQGGGDGDDLDG
IGGGNGVEQELRMLNEELRSIELECQSIMQAHQLRQNQQLDPSQLASSPGQSPKDGHKRH
GRLADIHEYPERSDSDKIREKDSSSAYNTAESARSTPLGMERSPDHSLQRHIRITNQKNL
RLASSTPSSPIPIPKPQGTPSRSRPADPGSVISSSPDQSNPSRSESDPALPADDERCEKK
GRTRDSRRGLPYGSYQTTPYQGPGGSRQLQSYMQLLQQHSSLEYSQSQLSLLSVCRDPVH
RSGRPGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMK
MGRYWSKEERKQHLARAREQRKRREFMQKSRLECLKEGPTSGAEGRKEINILELSHKKMM
KKRNKKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgggaggaacactacaaactgctgtatgag
attgcacaggtgaatgcacgcgacttttccaaggtcgagcatgaggaggcagttgtggag
gccatcaggcgagaccccatcgttgtccaggttcttcggcgaacccccaccagaggcaca
gctgctgttgcacataaccacggcggcacgccacaggatgtgtgtgtggtggacgtttgc
acgcaaacagatatcaccttcgagcacatcatggcattggcgaagcttcggcctgctact
ccacctgtacctgacatctgtccctttcttttgtctgacagttgccattccatccacacc
atggaacatgagttttatgaatgtccggagtacctgtccaataccccagcagaggtggag
aggactgaagagtatgagtatgaggaggtagagctgtgtaggcagaacagccaggagaag
ctcggtttgacgctgtgctaccggactgacgatgaggaggacaccggcatctacgtcagc
caggtggaaccaaacagtatagcagccagagatggacgtatcaaggaaggagatcgtatt
ctacagattaatggctgtgaagtgcaagacagagagaaagctgttgccttgctgtcaagt
gaagaagcaaggagcatcatactcctggtgacaagaccagaaatgcagctggaggaggag
gtatggcttgatgaggagcaacaggagcttgtggaggagcttaagatggagatcctggag
gagaggaggaagcagaaggaacataactttgacaggagagatgagcatcaagctgaagaa
gagatgacaacagatactgctacctgttcctcaaacaatcaagacaaagacagtgggttt
ggacgcagtacagacagtccagaacaccaacccttgctgggcagactacacaggaggacc
ccagcccattgcctgagggaacgatggcgggcagagcatccacacacaagacgagggact
gtagtgccacaggacacccagggtcagaggatattgtccaaaggccaaggccatgaaggg
gtagtcagtattcgcaatggtggaggcggggtcctaggtttagagaatcggttccagcaa
ctcttagagctcaagtgtcaaatccggaatggaggtgagtgtggggtgtactccattcga
cacagtatagagtgtagtctcactgagcaaggaggaggggatggagatgacctagatggt
attggaggggggaatggagtggagcaagagttgaggatgctaaatgaggaactgcgcagc
attgagctcgagtgtcaaagcatcatgcaagcgcaccagctacgccagaaccagcagcta
gacccctcacaacttgcatcctccccagggcagagccccaaagacggacacaaacgacat
ggcaggttggcagacatccatgaatacccagagaggtcagacagcgataagatccgagaa
aaagacagctccagtgcctataacacggcggagagtgcacggtcaacaccactaggtatg
gagagatctcctgatcattctctgcagagacacatccgcattaccaaccagaaaaacctc
agactggcttcctccacaccctccagtcccatccctatccccaagccccagggtacaccc
agtcggagcagaccagcagacccaggctctgttatttccagcagtccagatcagagcaac
ccttcccgatctgagtcagaccctgccctgcctgcagatgatgagaggtgtgagaagaaa
gggagaaccagagattcgaggagggggcttccttatggttcttatcagacaaccccttat
caaggcccaggaggatccaggcaacttcagagctacatgcagctgctacaacagcactca
tccctggagtattcccagagccagctgagtctgctcagtgtctgtcgagatcctgtgcac
cggagcggacgccctggggaacctcgcctagagtggaaggtcaaagttcgcgctgatggc
acacgctacgttgcccggaggcctgctcgtgaccgcatcctgagggagcgggcgctgagg
atccgagaggagaggagcggaggcatgaccacagatgacgatgctatgagtgaaatgaag
atgggccgctactggagcaaagaggaaaggaagcagcatttggcacgggctagggagcaa
aggaagaggagggagttcatgcaaaagagccgtcttgagtgtctcaaggaggggcccacc
agtggagctgaaggaaggaaggagatcaatatcttggagctgagtcacaaaaagatgatg
aagaaacgaaataaaaagatcctggataactggatgaccattcaggagctgatgagccat
ggggctagagtcccagagggctccaaagtgcataacgccttcctgtctgtcacaactgtg
taa
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