Larimichthys crocea (large yellow croaker): 104934580
Help
Entry
104934580 CDS
T04659
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X3
KO
K06237
collagen type IV alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04382
Cornified envelope formation
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104934580 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104934580 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
104934580 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
104934580 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lco04147
]
104934580 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
lco00536
]
104934580 (col4a5)
Exosome [BR:
lco04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
104934580 (col4a5)
Glycosaminoglycan binding proteins [BR:
lco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104934580 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
104934580
NCBI-ProteinID:
XP_019116034
LinkDB
All DBs
Position
XIV:7750345..7788351
Genome browser
AA seq
1685 aa
AA seq
DB search
MNKDLKSLRQLAVPLLFLALCVAVQQSDSAACQGCVGSKCDCSGVKGAKGERGFPGLTGQ
PGVPGFPGPEGPIGSRGEKGSDGPQGPGGPKGIRGPAGLPGFPGTPGLPGLPGQDGPPGP
RGVAGCNGTKGERGLPGNSGILGHQGLPGPPGLPGQKGDPGDVISTNRFGEKGAVGLPGL
PGVPGSPGSPGLQGPLGPPGPRGYEGRPGSPGPPGPKGNMGLNFQGPKGEKGETGLPGPP
GPPGQVGEQKRSPETEIQRGDKGDPGLPGPRGDPGYPGPPGPSGGQKGDKGEPGEAGKRG
KPGKDGDPGAAGFPGIKGESGLPGPPGRDGERGLKGDRGYPGPPGQVIGGGTGGRAGPKG
EPGYPGSPGLKGDRGPAGLSGPPGPPGIPATGGGGHSGSPGFPGERGQKGEPGVPGVSLP
GPPGRSGSPGVQGPPGPPGPPGFASTQPNCLTGEPGRPGVQGERGYPGETGQKGEKGDTC
VNCFGGTSGVPGPQGPPGQPGFPGTPGSPGAKGDRGFPGTPGSVGPPGSSGPQGSPGFPG
EKGDPGEAVTVSGVRGEKGDTGFPGPPGLPGLDGRPGRDGVPGTPGPKGTPGSLLVKGER
GIPGDPGPAGIPGDRGPPGSPGFGPPGGTGEKGAQGVSGRPGGPGAPGAKGEPGLSVAEK
GLPGPRGQDGAPGLPGQPGGPGQPGQPGFPGLPGGKGDPGLPGIGLPGPPGAKGHPGIPG
QPGSPSGPGRPGVDGLPGQPGFPGPKGEPGFGLPGPSGLPGVPGGKGHPGPKGDPGFPGG
PGSPGRSGFDGPPGSKGEPGTPGLPGARGPPGSPTSGSVGPAGPPGTPGPMGPPGEKGFP
GGNGAKGDPGPPGLDIPGLPGDRGSPGFPGSPGPAGTPGPPGGPGRDGLPGLPGQKGDMG
PMGTPGPSGGPGGPGGPGGPGHKGEPGFPGRDGSPGGPGGKGERGDPGVPGPPGPSLPPH
AIKGGKGDPGLPGVPGIPGPKGTSGLPGDPGVPGSDGRPGLPGPPGPKGDSGIPGGPGGP
GGPGAKGNMGEMGFPGPSGQKGLPGQAGRPGSPGQPGGPGFPGPKGEPGSAGVGPPGSPG
HKGEPGQPGFPGSPGLKGTPGSPGLPGGSGGPGAKGDPGLPGFQGPPGTPGPKGLDGGPG
GPGLPGSPGRPGESGRPGGPGLPGEKGQPGRDGIPGPAGVKGDPGLPGYGGPGPSGLPGL
PGTKGDPGPPGQPGSPGFPGTKGDAGFPGSPGAAGNSGPPGPPGVPLQGPKGLQGTPGPP
GRQGGPGPQGPRGPPGSGGVKGEKGIPGSIGQPGFPGQKGDPGTPGFPGSSGLPGGPGSK
GDVGLPGVPGFPGPKGDPGLPGGSGLPGDPGDVGSPGLPGDPGVPPTPIVVKGERGPPGV
HGQPGGQGQPGSPGRDGPSGLPGTPGEPGPEGPPGFSGPPGRKGDNGPAGQPGQRGYPGP
PGSDGPQGPPGLPGSVSAAHGFLITRHSQGQDVPFCPEGTNLIYDGYSLLYVQGNERAHG
QDLGSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIKPY
ISRCSVCEAPAMVIAVHSQTIQIPTCPGTWDTLWIGYSFMMHTSAGSEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSRCVV
CMKKT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagacttgaagagcctgcgacagctcgccgtgcctctgctcttcctcgccctg
tgcgtcgcggtgcagcagtccgactctgcggcttgccaaggatgtgtgggtagcaaatgt
gactgcagtggagtaaaaggagcaaagggtgagcggggtttcccaggtctcaccggacag
ccaggagtcccaggattccctggacctgaagggccaattggatccagaggcgagaagggt
agcgatggacctcaaggaccaggtggcccgaaaggaataagagggcctgctggattgcca
ggatttccaggaacaccaggacttccaggtctacctgggcaggatggacctccaggccca
agaggagtggcaggttgcaacgggacaaagggtgagaggggtttgccaggaaattcagga
atcctcggacaccaaggactgccgggtccacctggtctgccaggacaaaaaggagaccca
ggtgacgtgatctccaccaaccgttttggagagaaaggagcagtgggattgcctggattg
ccaggagttcctgggtctccaggatcccccggtttgcaaggtccactcggtcctccagga
cctagaggctatgagggtcgtccaggttctcccggtcctcctggaccaaagggaaacatg
ggattgaacttccaaggacctaaaggagagaagggtgaaaccggtcttccaggacctcct
ggtcctccaggacaagttggagaacagaagcgatcacccgagacggagattcagagggga
gacaagggtgacccaggacttccaggcccccgaggtgatccaggatatccaggacctcct
ggtccctcgggtggccagaaaggagacaagggcgaaccgggagaagcaggcaaaagaggc
aaaccaggcaaagatggtgaccccggtgctgcaggctttcctggaatcaaaggagaatca
ggccttccaggtcctccaggcagggatggggagagaggactcaaaggtgatcgtggatac
ccaggcccaccaggacaggtgattggcggaggcacaggaggtcgtgccggccctaaaggt
gagccgggataccctggctcacctggactcaaaggagacagaggaccagcaggtttatca
ggacctccaggtccaccaggaattccagctacaggtggtggtggtcactctggatcgcct
ggcttcccaggagagagaggtcagaagggagagcctggcgttccaggagtgtctctgccg
ggtcccccaggtcgttcgggatctcccggtgtccagggaccaccaggtcctcctggacct
ccaggctttgcctcaacacaaccaaactgtctcaccggagagcctgggcgtcctggtgtg
cagggagagagaggttacccaggagagacgggccaaaaaggtgagaagggcgacacctgt
gtgaactgctttggcggcaccagtggtgtcccaggaccccaaggacctccaggacagccc
ggattccccggaactcccggctccccaggtgccaaaggagacagaggatttccaggaaca
cctggtagcgttgggccacctggttcctctggtcctcaaggttctccaggatttcccgga
gagaagggagacccaggtgaagctgtcacagtaagcggtgtcaggggagagaagggtgac
actggattccccggaccacctggtctgcccggtctggatggtagacctggacgagatgga
gtgcctggaactcctggacccaaaggaactcctggctctttgctagtgaaaggagaacga
ggaatccctggtgatccaggtccagcaggtattccaggagacaggggccctccaggatca
cctggctttggacctccagggggcacaggagagaaaggtgctcaaggcgtctcaggaaga
cctggaggtcccggtgcacctggtgctaaaggtgaaccaggcctatcagtggctgaaaaa
ggcttaccaggacccagaggacaggacggcgcaccaggactgcctggtcaaccaggtggc
ccaggtcagcctggacagcctggtttccctggtttaccaggaggaaagggcgatcctgga
ctcccaggaattggactcccaggacccccaggagctaaaggacacccaggtatacctggc
cagccaggatcgccttcaggacccggcagaccaggagtagatggacttcctggccagcct
ggattccctggacccaagggtgagcctggctttggccttcctggcccctcaggtttacca
ggagtacccggaggtaaaggacacccaggaccaaaaggagatcccggtttccctggtggc
cctggttcacctggacgatctggatttgatgggcctccaggctctaaaggtgagcccggt
acacctggtttacctggagcccgtggcccgcctggatcccccaccagtggctcagtgggg
cctgccggcccacctggaacccctggcccaatgggaccaccaggcgagaaaggattcccc
ggaggaaatggagcaaagggagaccccggtcctccaggtctagacatcccaggtctgccc
ggagatagaggaagtcctggtttcccaggatcgccaggaccagctggaactccaggacct
cctggtggacctggacgggatggcctgcctggactgccaggtcagaaaggtgacatgggt
cccatgggaactccaggaccttctggaggaccaggagggccaggaggacctggtggtccc
ggacataagggtgaacctggattcccaggcagagatggttcacctggtggtcccggaggt
aaaggtgagagaggcgaccccggtgtcccaggacccccaggaccaagcctcccaccacat
gccataaagggtggcaaaggagatcctggactaccaggtgtaccaggtattccaggtcca
aaaggtacctctggtctccctggtgaccctggagtgccaggatcagatggacgccctgga
ctcccaggaccaccaggtcctaagggagattctggcattccaggaggcccaggtggtcct
ggaggaccaggagctaaaggcaacatgggagaaatgggattcccaggaccatcaggacag
aagggtctaccaggtcaggcaggtaggcctggatctccgggacagccaggaggacctggt
ttccctggacccaaaggtgaaccaggctctgctggagttggaccaccagggtcacccgga
cacaagggtgaaccaggccagccagggttcccaggaagtccaggacttaaaggaactcca
ggatcacctggtctccctggtggatcaggaggaccaggtgccaaaggcgaccctggcttg
ccaggattccaaggtcctcctggtactcccggtcctaagggtctcgatggtgggcccggt
ggtccaggtctccctggatctcccggtagaccaggagagtccggccgaccaggaggacca
gggttgccaggagagaagggtcagccaggtcgggatgggatcccaggaccagctggagtc
aaaggagatccaggacttcctggttatggtggtcctggtccatctggtcttccagggttg
ccaggtacaaagggagacccaggtcccccaggccaacctggcagtcctggtttccctggc
actaaaggagatgctggtttccccggctctcctggtgccgcaggcaacagcggccctcct
gggccaccaggagttcctctgcagggtcccaaaggcctccaaggaactcctggaccacct
ggaagacaaggtggacctggcccacagggaccccgtggtcccccaggaagtggtggcgtt
aagggagagaaaggtattcccggtagtattggccagccaggcttccccggacagaaggga
gatcctggtactcccggattcccaggctcctctggtcttcccggcggtcctggttcaaaa
ggagatgttggtctgcctggtgttcccggattccctggaccaaagggagacccaggactt
cccggtggcagtggactccctggagatcctggagatgtcggatcccctggccttcctggt
gaccctggtgtacctccgactcccattgtggtaaagggtgagcgcggaccccctggtgtt
cacggtcagcctggtggtcagggacaacctggttctcctggccgtgacggaccttcaggt
ctacctggtacccctggagaacctggaccagagggtcctccaggcttcagtggcccacct
ggcagaaagggagacaacggacctgctggtcagcctggtcagcgtggctaccctggtcct
cctggctcagatggtccacagggtcctcctggtcttccaggatccgtgtctgcagcccat
ggcttcctcatcacccgacacagccagggtcaggatgtgcctttctgtcccgaaggaact
aacctcatctacgacggttactccctgctgtatgtccagggcaacgagagggcccacgga
caggaccttggctcggccggcagctgcctgcgcaggttcagcaccatgcccttcatgttc
tgcaacatcaacaacgtttgcaactttgcctcccgtaacgactactcctactggttgtct
acacctgagcccatgcccatgtccatggcccccatcactggagagagcatcaagccttac
atcagcaggtgttcagtttgtgaagctccagccatggtgatcgcagtccacagtcagacc
atccagattcctacttgccctgggacttgggacactctgtggatcggatactccttcatg
atgcacaccagtgcaggttcagaaggctccggtcaggctctggcctcccctggctcctgc
ctggaggagttccgcagtgctcccttcatagagtgccacggcagagggacatgtaactac
tacggcaactcctacagcttctggctggctactgtagaacccagtgagatgttcaggaag
ccccagtcagagactctcaaggcgggtaacctacggacgcgcgttagccgttgcgtggtc
tgcatgaagaagacgtaa
DBGET
integrated database retrieval system
