Larimichthys crocea (large yellow croaker): 104935116
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Entry
104935116 CDS
T04659
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04140
Autophagy - animal
lco04148
Efferocytosis
lco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104935116 (vps11)
04148 Efferocytosis
104935116 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104935116 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lco04131
]
104935116 (vps11)
Membrane trafficking [BR:
lco04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104935116 (vps11)
Hops complex
104935116 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
VPS11_C
zf-C3HC4_2
zf-rbx1
zf-C3H2C3
zf-RING_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
ADIP
zf-RING-like
TSGP1
DUF6543
Kbp-5
Motif
Other DBs
NCBI-GeneID:
104935116
NCBI-ProteinID:
XP_027129146
LinkDB
All DBs
Position
XXII:10006645..10014826
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AA seq
946 aa
AA seq
DB search
MTRPLSALTKLTGASRMAAFLQWRKFVFFDKDTVKDPVKDPGDSGKNFALPGGISACDSG
RGHIVLGDMDGKIWLLTRSLQLSSFQAYKLRVTHLYQLKQHSILVSVGQDEHGINPLVKV
WNLDKRDSGNPLCTRIFPAIPGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDR
HSKTLTLHEGTSPVTGLAFRQVAKVTHLFVATLERVHCYTLSIKEYPKIELDTHGCALRC
SSLSDPSQDSQFIVAGDECVYLYQPDERGPCFAFDGHKLLAHWHRGYLFLLIRDAKSPNK
TDFGSRETSPSDKQLLTIYDLDNKFIAYSASFDDVVDVVAEWGSFYILTRDGKMFVLQEK
DTQTKLEMLFKKNLFVMAINLAKSQHLDSDGLSEIFRQYGDHLYLKGDHDGAIQQYIRTI
GKLEPSYVIRKFLDAQRIHNLTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIK
SSESEVHFDVEIAIKVLRQAGYHSHAVFLAEKHMHHEWYLKIQLEDLKNYQEGLRYIGRL
PFEQAESNMKRYGKTLMHHVPEGTTLLLKGLCTNYQPSRDSAEKDSLDRGRINKANSEEF
IPIFANNPRELKAFLEHMIEVEPRSPQGVYDTLLELRLQDWAHEQDPERKRVLQGEAVSL
LRSDNTVFDKALVLCQMHNFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVIEACKRYGDQ
EGCLWEQALGYFARKEEDCKAYISEVLHHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYL
INKLQRESQQIEDDERKIRQYREETAHLRSEIQELKTSAKIFQKTKCNMCNSPLELPSVH
FLCSHSFHQHCFESYAESEAECPTCTPENRKVMDMLRAQDQKRDLHDHFNRQLRSSNDGF
SVVADYFGRGVFNKLTLVTDPPGSKTVGSLEVNLQRDLLIHTKRNC
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgacccgccctctgtcagcgctaacgaagctaacaggagctagcaggatggcggctttc
cttcagtggaggaagttcgtgttcttcgacaaagacacggtgaaggatccggtgaaggat
ccgggggacagcgggaagaacttcgctctgcccggcgggatctcggcctgtgactccggc
agaggtcacatcgtgctgggggatatggacgggaagatctggctcttgacgcgctccctg
cagctgtcgtcttttcaggcctacaagctgcgtgtgacgcacctctaccagctgaagcag
cacagcatcctggtgtcggtggggcaggatgaacacggaataaaccctctggtgaaggtg
tggaacctcgacaaaagagacagcgggaatcctctgtgcacgaggattttccctgcgatt
cccggcaacaaaccgactgaagtgtcttgcctcagcgtgcatgaaaacctcaacttcatg
gccatcggcttcacagacggcagcgtggttctgactaaaggtgacatcaccagagatcgt
cacagtaaaactctgaccctgcacgagggaaccagcccggtcacgggcctcgctttccgc
caagtggcaaaggtcacacatctgttcgtcgccactctggagagagttcattgctacacc
ctctccatcaaggagtatcctaaaatagagctggacacgcatgggtgtgcgctgcgctgc
tcctccctgtcagatccctcccaggactcccagttcatcgtagccggagacgaatgcgtg
tacctgtaccagcctgacgaacgagggccctgcttcgccttcgacggacacaagctgttg
gcccactggcaccgcggatatctgttcttactcatcagggacgcaaagtcacccaataag
acagactttggtagcagggagacttctccgtctgacaagcagctgttgaccatctacgat
ctggacaacaagttcatcgcctacagcgcctccttcgatgacgtcgtcgacgtggtggca
gagtggggttctttctacatcctgaccagagatggaaagatgtttgtccttcaggagaag
gacacgcagaccaaactggagatgctgtttaagaaaaacctgtttgtcatggcgataaac
ctggccaagagccagcacctggacagtgacgggctttctgagatattcagacaatacggc
gatcacctttacctgaagggagaccatgacggcgccatccagcagtacattcgcacgatc
gggaaactggagccgtcgtacgtcatcaggaaattcttggacgcacagaggatccacaac
ctcacagcgtatctgcaggcgctgcacagacagtccctggccaacgcagaccacaccaca
ctgctgctcaactgttacaccaagctgaaggacagctccaagctggaggagttcattaag
agcagtgaaagcgaggtccacttcgatgtcgagatcgccatcaaggttcttcggcaggcc
ggctaccacagccacgccgttttcttggctgagaaacacatgcaccatgaatggtacctg
aagatccagctggaagacctcaagaactaccaggaaggtctgcgttacatcggacgtctg
cctttcgaacaagccgagagcaacatgaagcgttacggcaagacgctgatgcaccacgtc
cccgaaggtaccacgctactcctgaagggcttgtgcaccaactaccagccgagcagagac
agcgctgagaaagacagcctggacagaggtcggatcaacaaggcaaattccgaggaattc
atcccgatctttgccaacaacccgcgagagctgaaagccttcctggagcacatgattgag
gtggagcctcgttctccccagggtgtgtacgacacactgctggagctccgactgcaagac
tgggcgcacgaacaggatcctgagagaaaaagagtcctgcagggagaagctgtttcgctg
ttgaggagcgacaacaccgtgtttgataaggcgctggtcctctgccagatgcacaacttt
aaagaaggcgtcctgtacctgtacgagaagggcaaactgtaccagcagataatgcactac
cacatgcagaacgaggagtatggaaaagtgatagaggcctgcaagcgctacggggaccaa
gagggttgtctctgggagcaggcgttgggatactttgccagaaaagaagaagactgcaag
gcctacatcagcgaggtcctacaccacatcgaccaaaacaacctgatgcctccgttactc
gtggtgcagactctggcgcacaactcgacggccactctctccgtcataaaggactacctc
atcaacaagctgcagagagaaagccagcagatcgaggacgacgaacgcaaaatccgccag
taccgtgaggaaactgctcacctccgctcggagatccaggagctcaaaacgagtgccaag
atattccagaagaccaagtgcaacatgtgcaacagccccctggagctgccgtccgttcac
ttcctgtgcagccactccttccaccaacactgcttcgaaagctacgccgagagcgaggcc
gagtgcccgacgtgcactccggagaaccgcaaggtcatggacatgctgcgcgcgcaggac
cagaaacgagacctgcacgaccacttcaacagacagttgcgcagctctaatgacggcttc
tccgtcgtggctgactacttcggtcgaggagtgtttaacaaactgactctggtcaccgac
ccgcctggcagcaaaactgtcggcagtctggaggtcaacctgcagagagaccttctcatc
cacaccaagagaaactgctag
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