Larimichthys crocea (large yellow croaker): 104936343
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Entry
104936343 CDS
T04659
Symbol
pabpc1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03015
mRNA surveillance pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104936343 (pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
104936343 (pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104936343 (pabpc1)
03041 Spliceosome [BR:
lco03041
]
104936343 (pabpc1)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104936343 (pabpc1)
mRNA cycle factors
Stress granule specific factors
104936343 (pabpc1)
Spliceosome [BR:
lco03041
]
Complex C
Other components
Complex C specific factors
104936343 (pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_3
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
104936343
NCBI-ProteinID:
XP_010750670
UniProt:
A0A6G0IAZ1
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All DBs
Position
XIII:complement(27636590..27643265)
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AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFGKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDDMNGKEMNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPPAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPSAPRPQTFNTIRPTTTANTQVPRM
MASQRMPTQALGQRPAGAASAAAPVRTMPQYKYAAGVRNPQQHMASQPQVTMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcctagctacccgatggcgtccctctatgtgggggacctgcatcca
gacgttaccgaggccatgctctacgagaagttcagcccagccgggcccatcctgtccatc
agagtatgcagagacatgatcacccgtcgatccctcggctatgcctacgtcaacttccag
cagcccgccgacgccgagagagccctggacaccatgaactttgacgtgatcaaaggcagg
cctctccgcatcatgtggtctcagcgtgacccttccctgaggaagagcggagttgggaac
atcttcatcaagaaccttgataagtccattgacaacaaggctctctacgacaccttctcc
gcctttggaaacattctttcttgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggatttgtgcactttgagacccacgaggctgctgagcgggccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtatttgttggccgcttcaaatcacgcaaagagagggag
gctgagctcggagcacgtgccagagagttcaccaacgtttacatcaagaactttggggag
gacatggatgacgagaagctgaaggagttgtttggtaaatatggaccggcactcagtatc
cgggtcatgactgatgagagtggtaaatctaagggatttggctttgtcagcttcgagaga
cacgaagatgcacagaaggccgtcgacgacatgaatggcaaggaaatgaatggcaggcaa
gtgtatgtgggccgcgcacagaagaaaggggagcgccagaacgagctcaagcgcaaattt
gagcagatgaaacaggatcgcatgaccagataccagggtgtcaatctgtatgtgaaaaat
ctggatgatggccttgatgacgagcgtctgcgcaaagagttctctccatttggaaccatc
acaagtgctaaggtgatgatggagggtggccgcagcaaaggctttggcttcgtgtgcttc
tcctccccagaggaggccactaaagctgtaacggagatgaatgggcgtattgttgccaca
aagccactctacgtggcccttgcccagcgcaaggaggagcgccaggcccacctaaccaac
cagtacatgcagaggatggccacagtccgcgcggtgcccaaccctgtcctcaacccatat
cagcctgccccaccctcaggctatttcatggcggccatacccccggcccaaaaccgtgct
gcatactactccgccaaccagctggcccagctccgccccagcccccgttgggctactcag
ggagtgcgtcctcagcacttccagaacatgcccaacgctatgcgcccatcagctccaagg
ccccagaccttcaacaccattcgtcccaccaccacagccaacacccaggtcccacgcatg
atggcttcccagcgcatgccaacccaggccctcggtcagcgccctgccggtgctgcatca
gccgccgctccagtgcgcaccatgccccaatacaaatatgctgctggtgtgcgcaacccc
cagcagcacatggcctcccaaccacaggtcaccatgcagcagcctgctgtccatgtccaa
ggacaggagcccctgactgcctccatgctggctgctgccccgcctcaggaacagaagcag
atgctgggtgagcgtctgttccccctgatccagaacatgcaccccagcctggcaggcaag
atcacgggtatgctgcttgagatcgacaactccgagcttctccacatgctcgagtcccct
gaatcgctgcgctcgaaggtggatgaggctgttgctgtgcttcaggcccaccaggccaag
gaggctgctcagaagtccaccacccctgctggtgttcccagcgtctaa
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