Larimichthys crocea (large yellow croaker): 104936584
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Entry
104936584 CDS
T04659
Symbol
rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lco03000
]
104936584 (rc3h1)
04121 Ubiquitin system [BR:
lco04121
]
104936584 (rc3h1)
Transcription factors [BR:
lco03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
104936584 (rc3h1)
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
104936584 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf-CCCH_UNK
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
104936584
NCBI-ProteinID:
XP_010750943
LinkDB
All DBs
Position
XII:14276088..14290781
Genome browser
AA seq
1143 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSILSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLVSRLPGSGGLMPDDGLSLDVGVTRKPS
PLTNGSSVPSLPQLIPRGTDTVSTQYELLTHRKPIKMDGGSPSAPGSPPDPLDNGPKPMP
LPHTMAHPRMPADHLPGVKHMTGVARGPPVYPQPQLPEMCYDTRPPPSASQYETPQYSTV
SGYPYQQPPQYVPRDYMRNPPPNESGPPYQDPYPGYGPPERPYQAPHSGPPFSYPHPPHH
DRGRHGNYPGPPPPPQPYPSQRDGLVRMSPAPLDVPPQSAGQANSLYHQEPSARDRYPPD
GYYPPGAQPPPMRAYVRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLS
HPFPSDYPPEYGEESSKTMMKCRESDYAGQYSPWSCETIGSYIGTKDAKPKDVMVPGTME
MMNVEAKGLREPSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQA
MASTAQNPNSKHMAVSAEYTYGSHAGWGGASYPSHQAASSSQGHFNERLPMAPSDREQLK
IELQQVNQQINQQTQMRSMEAASNSLLLQREASALAGQPVQPNQGQATAAQQQQQQQQQQ
AKWPAGGASTTAVSSEQLSLELHRVEREIGKRTREMALENQVAHDVQQYKMKPAENGQPE
HKTQLEEILSLSEVSNGSSSLQESAVGGSMLSLTNKTSVLSLCSDPGATGSEMQKNGVVH
SCS
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacggagttcctgctgtgcccgatctgcacgcagacg
ttcgaggagactgttcgccggcccatcagcctgggctgtggacatactgtctgcaagatg
tgcctgaacaagttgcaccgcaaggcctgtccctttgaccagacggccatcagcacagac
atcgagcagctacctgtcaacacggccctgttgcaactggtgggaggccaggttcctaag
gctcagccagttgccttgattaccagtccagaggactcgcagcattatgaggaggccagg
cagtgtgtggaggagctggccctctacctcaaacctctcagcaacactcgaggtgtgggt
ctgagcagcacggcccagagcatactgagtcgaccaatgcagaggaaactggtaactctg
gtccactgccagctggtggaggaggagggccgtgttagagccatgagagctgcccgctct
ctgggtgagcgaactgtgactgaactcatcttgcagcaccagaatccgcagcagctctcc
tccaatctgtgggctgctgtccgtgcacgaggatgtcagtttctcggcccggccatgcag
gaggaagctctaaagttggtccttctcgctctagaagatggctctgctctgtccaggaag
gtgttggttctctttgtagtgcagaggcttgagccacgctttccgcaggcctcaaagacc
agcataggccatgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaagcgt
gatgaagattcatccctgatgcagctgaaagaggagtttcgcacttatgaggctctgcgg
cgcgagcacgactctcagatagttcagattgccatggagggtgggctgcgcatcgcacct
gaccagtggtcttctctgttatatggagatcaatctcataagtcacacatgcagtctatc
attgataagctgcagaccccagcgtcctttgctcagagtgttcaggagctgacgattgcg
ctgcagaggaccggagatccagccaacctcaacaggttgcggccacacttggaattactg
gccaacattgatcccagtcctgatgctccccctcccacatgggagcagcttgagaaagga
ttggtggcagtgaaaacagtggtgcatggactggtggacttcattcagaaccacagcaag
aaaggagctgaccctcaacagcctcctcagcacagcaagtacaagacctacatgtgtcgt
gacatgaagcagaagggaggctgtcctcgcggagccagctgtacctttgctcactctcag
gaagaactggagaagtatcgaaagatgaataagcgcctggtaagtcgcctccctggctca
ggagggctcatgccagatgacggcctttctcttgatgtaggagtgacccggaagccatca
cccctcaccaatggcagcagtgtgccctctttgccccagctcattccccgcggcaccgac
acagtctccacacagtacgaactgttaacccatcgtaaacccatcaagatggatgggggg
agtcccagtgccccagggtcaccacctgatcccctggacaatgggcccaaacctatgcct
ctaccacataccatggcacacccaagaatgccagcggaccacctcccaggggtgaagcac
atgactggggtagctagaggtccaccagtgtacccacagccacaactccctgagatgtgc
tacgatacccgcccaccaccttctgcttctcagtatgagaccccacaatactccacagtg
tcagggtacccataccaacagccgccacagtatgttcctcgggattacatgcgtaatcct
ccacccaatgagtcaggacccccttaccaggacccctacccgggctatgggcctccagag
cgcccctaccaggctcctcactctggtccacccttctcctaccctcaccctccgcaccat
gaccgaggccgccacgggaactaccctggcccaccacctcccccgcagccttacccatct
cagagggatggcctggtcagaatgagtcccgcgcctctagatgttcccccgcaatcagca
ggacaggctaactcactgtaccaccaggagccaagtgctcgggatagataccctccagat
ggctactatccaccaggtgcccagcctccacccatgagggcttatgtcaggggaccatcg
tatagtggttcgcagcccagcttggactacctgcaccgacgtcggcaggagctcttatcc
cagctggaggaaaggaaagtcatctcccctccaccattcgctgcctcccccactctttct
caccctttccccagcgactaccctccagagtacggtgaggagagctccaaaacaatgatg
aaatgcagagagtctgactatgcaggccaatactccccctggtcttgtgaaacaatcggc
tcctacattggcacaaaagatgccaaacccaaagacgttatggttcctggcaccatggag
atgatgaacgtggaagctaagggtctgagggaaccatcgctggaggctcctcggaggggt
gcggaagtcaaggacgatgaccccattatcccgtttggcccccagcctactgtatcacgc
ttcggtgccatttcccgcacctcaaaaacgggctaccagaccaccggccctgtgcaggct
atggcctctaccgcccagaacccaaactctaaacatatggctgtgtcagcagaatacaca
tatggaagccatgcaggatggggtggagcgtcatacccctctcaccaggctgcctcctcc
tctcagggacacttcaatgagcgtctacctatggcaccctcagacagagaacagttaaag
attgagctgcaacaggtcaaccagcagatcaaccaacagacccagatgcgaagcatggag
gctgccagtaactctttactcctgcagagggaggccagtgcgttggcaggacagcctgtg
cagccgaaccagggccaggcaacagcagcccagcagcagcaacagcagcagcagcagcag
gccaagtggccagcagggggagcgagtaccacagctgtctccagtgaacagctgagcctg
gagctccaccgggtggagagagagatcggcaagaggacccgtgagatggctttggaaaac
caagtagcccatgatgttcagcagtacaagatgaaacctgcagagaatggacaaccagag
cacaagactcagctggaagaaatcttgtctcttagcgaggtgtcaaacggctccagcagt
ctgcaagaaagtgcagtgggcgggtccatgctgtcactgaccaataagacgtctgtgctg
agcctgtgctctgacccaggtgccactggttcagagatgcagaagaatggcgtcgtccat
tcctgctcttag
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integrated database retrieval system
