Larimichthys crocea (large yellow croaker): 104936932
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Entry
104936932 CDS
T04659
Name
(RefSeq) integrin alpha-11
KO
K06587
integrin alpha 11
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04510
Focal adhesion
lco04512
ECM-receptor interaction
lco04810
Regulation of actin cytoskeleton
lco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104936932
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104936932
09142 Cell motility
04820 Cytoskeleton in muscle cells
104936932
04810 Regulation of actin cytoskeleton
104936932
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104936932
Cell adhesion molecules [BR:
lco04515
]
Integrins
Integrin alpha subunits
104936932
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
VWA_2
FG-GAP_3
Integrin_A_Ig_2
FG-GAP_2
Motif
Other DBs
NCBI-GeneID:
104936932
NCBI-ProteinID:
XP_027140594
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Position
XII:2989404..3022734
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AA seq
1200 aa
AA seq
DB search
MDYYRLLLLLLSTCSFLPDLQLCFNFDTKNFKIFHGSKENQFGYTVQQHEAGGRQWLLVG
SPFESTGKQQTGDVFRCPLDTRNSVNCSRLHLGKLSLDNVSERKDKMRLGMTLTSNPKDN
SFVTCGPLWSHECGSSLYSTGICSRVSRNFRLSHTIAPALQRCETFMDIVIVLDGSNSIY
PWYEVQDFLINILQKFYIGPGQTQVGVIQYGSTVVHEFSLGEYQTVEEVVEAARNIDQRG
GEETRTALGINVARSEAFKRGGRPGAQKVMIVITDGESHDSPQLQQAVPDSKEDNITMYA
IAVLGYYNRRGINPEAFLKEIKFIASDPDDKHFFKVTDESALKDIVDALGERIFSLEGTS
SQGRGFGLQMAQAGFSSHLVKDGILLGAVGAYNWNGAVLKETKHGKVVPPKSSYKDEFPE
ELMNHGAYLGYSVGSLISSRGSQLYVAGAPRFNHTGKVIVFTLKNTGNLTILEALLGEQI
GSYFGSELLSMDINGDGHTDVLLVAAPMFYSEGWEKGKVYIYTVTPQTSFILQGALEFSD
RSQNSRLGSALAQIPDMNGDGFRELVVGAPLEDDHQGAVYVFYGQDKTIQHQYRQRLSAA
GFNAGLQYFGQSLHGVLDVNGDGLVDLAVGALGAAVIIWSRGVVRIQAKLIFEPEKVNVF
NKDCRRGGKEVTCMSVIVCLSLEPRTKTKTKNRTDVGVWYSLALDERRFPPRAVLDELDR
QQRRSLVLQTGGGPSCQRLGFSIQETTDYGRPIAVVLETGQQNLDEGPVLDPDWPSVLRT
ELPFWNGCEQEDTCVPDLVLHGHTDLTDVQSFCSSKDRDTWSLCGHQRASEEDSVYVVET
GRRRVVVSARLENQGENAYGANIHISTSSNLLFSSLIVKDQSDIQIECFSEDRLANQRRC
NISAPFMKSLSQVSFRLEFEFSRSVFLDHARVVMTTSSDGEDGYPDDNTNDIFLPLKYQT
DLLFTRDPNPPRFEIRSDSSSSSSSWDLQDSSSPTFNLTYYIQNLGIFSVQDIVFKADIW
AVTRKRNQLVNITDYSIEQVAGSHCTLHQPRTTNEVTAEDLSHLSQLNHSNSASLPVQCR
LNLPASRELKVTLRGRLQLPALLAVSFRSLEVLTAASIQLEASSVMFLQEDRPVRKIILE
LRKEEDYIIPFWIILGSSLGGLLLLALLVLALWKLGFFNRQRRQEEEEQPVANGKAAEEL
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atggattattaccggcttcttcttcttctgctgtcgacctgcagcttcctgccagatctt
cagctctgcttcaacttcgacacgaagaacttcaagatcttccacggctctaaagaaaac
cagttcggttatacggtccaacagcacgaggcgggaggacggcagtggttgctggtcgga
tctccgtttgagtccacggggaagcagcagactggtgatgtgttcaggtgtccgctggac
accaggaactctgtaaactgcagccggctgcacctggggaaactttctttggacaacgtg
tctgagaggaaagacaagatgaggctgggcatgacgctgacctccaaccccaaagacaac
agctttgtgacctgcggtccgctctggtctcatgaatgtggaagctcgttgtacagcaca
ggaatctgctccagagtcagtcggaacttcagactgtcccacaccatcgcacccgccctg
cagaggtgtgagacgttcatggacatcgtgattgttctggatggctctaactccatctac
ccatggtatgaggtccaagacttcctcatcaacatcctgcagaagttctacatcggccca
ggtcagacgcaggtgggtgtcattcagtatggctccacagtagtccatgagttcagtctg
ggtgagtaccagaccgtggaggaggtggtggaggctgcgaggaacatcgatcagcggggt
ggcgaggagacgaggacggcgctgggcatcaatgttgcacggtcggaggcgttcaaacgt
ggcggccggcccggcgctcagaaggtgatgatcgtgatcacagatggagaatctcacgac
agtccacagctacagcaggccgtccccgacagcaaggaagacaacatcaccatgtacgcc
atcgctgttctgggttattacaaccgtcggggaatcaaccctgaagcttttctaaaggaa
atcaagttcatcgctagcgacccggatgacaaacacttcttcaaagtgacagacgaatcg
gcgctgaaagatattgtggacgcactgggagagaggattttctctctggaaggaaccagc
agtcagggtcgagggttcggtctgcagatggctcaggctggattctcatcacatttagtc
aaagatgggatcctgctcggggcggtgggcgcctacaactggaacggtgccgtgctgaag
gagactaaacatggaaaagtcgttccaccaaaatcctcctacaaggacgagtttccagag
gagctgatgaaccacggagcgtatctgggttactcggtgggttcactcatttcgtctcgt
ggatctcagctctacgtggccggagcgccgaggttcaaccacaccggtaaagtcatcgtg
ttcaccctgaagaacaccggaaacctgaccatcctggaggcgctgctgggagaacagatc
ggttcgtatttcggcagtgagttgttatcgatggacataaacggcgacggacacaccgac
gtcctcctcgtggcagcacccatgttttacagcgagggctgggagaaagggaaggtttac
atctacactgttactccacagacatcgttcatcctgcagggggcgctggagttttctgac
cgctctcagaactcccgtttgggttcggcattggcccagatacccgacatgaacggggac
gggttcagggagctggtggttggagcaccactggaggacgaccaccaaggggcggtctac
gtattttatggacaagacaaaaccatacagcaccagtacagacagcgtctgtctgcggcc
ggctttaatgcaggtctgcagtatttcggtcaaagtcttcacggtgttttggatgtcaat
ggagacgggcttgtggacctcgcagtgggagctctgggagctgctgtcatcatctggtct
cgcggcgtggtgcggattcaggccaagctgatctttgaaccagagaaggtgaacgtcttt
aacaaagactgtcggcgaggagggaaggaggtcacctgcatgtctgtcatcgtctgtctg
agtctggagcccaggaccaagaccaagaccaagaacaggacggatgttggtgtttggtac
agcctggctttggatgagagacgttttcctcctcgagctgtcctcgatgagttggaccgt
cagcagaggaggagtctggttcttcagactggaggaggtccgagctgccagcgcctcggg
ttctcgatccaggagacgactgattacggacgtcccatcgcggttgtcctggagacgggg
cagcagaacctggacgagggcccggtgttggacccggactggccgagcgtcctaaggacg
gagcttcccttctggaacggctgcgagcaggaggacacctgcgtgccggacctggtcctg
cacggccacacggacctcacggacgtccagagcttctgcagctccaaggaccgagacacc
tggtcgctctgcggccaccagagggcgtcggaggaggactcggtgtacgtggtggagacc
gggcggaggagggtggtggtgtcggcccgactggagaaccagggagagaacgcgtacgga
gccaacatccacatctccacctcctccaacctcctcttctccagcctcatagtcaaggac
caatcagatattcagatcgagtgtttctctgaggacaggctggccaatcagaggaggtgt
aacatcagcgctccattcatgaagtccttgtcgcaggtatctttccgtctggagtttgag
ttcagccgctcggtctttctggatcacgcacgggtcgtcatgacgaccagcagtgatgga
gaagacggttaccccgacgacaacaccaacgacatcttcctccctctgaagtaccaaacc
gacctcctcttcaccagagatccgaaccctcctcgttttgagatcagatccgacagctct
tcttcttcttcatcgtgggatctgcaggacagcagctctccgaccttcaacctcacttat
tacatccagaacctcggcatcttctcagtgcaggacattgtgttcaaggctgatatctgg
gctgtgaccaggaagaggaaccagctggtgaacatcacagactacagcatcgagcaggtc
gccggctctcactgcacgctgcatcaacccagaacaaccaatgaggtcacagctgaggac
ctgtctcacctgtctcagctgaatcacagtaacagcgccagtctgccggtccagtgccgc
ctgaacctgccggcctccagagagctgaaggtgacgctcagaggaagacttcagcttccc
gccctgctcgctgtgagcttcaggtctctggaggtactgacggcggcctccatccagctg
gaagcatccagtgtgatgttcctgcaggaggaccgacccgtccggaagataatcctggag
ctcaggaaagaggaggattacatcatcccattctggattatactggggagctcgctggga
ggtctgctgctgctggctttactggtgctggccctgtggaagcttggcttcttcaacaga
cagaggagacaggaagaggaggagcagcctgtagccaatgggaaggcagcagaggagtta
taa
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