Larimichthys crocea (large yellow croaker): 104937770
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Entry
104937770 CDS
T04659
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03013
Nucleocytoplasmic transport
lco03015
mRNA surveillance pathway
lco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104937770 (casc3)
09122 Translation
03013 Nucleocytoplasmic transport
104937770 (casc3)
03015 mRNA surveillance pathway
104937770 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104937770 (casc3)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104937770 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
104937770
NCBI-ProteinID:
XP_027132071
LinkDB
All DBs
Position
Unknown
AA seq
792 aa
AA seq
DB search
MADRRRRRRRASQDSEDEDGSGSGSDSGRSGSPATKSRGREPDPPEAAAARVEAKSEESE
CESEDGVGEAVLSDYDSADPEENGSHSEGVEEEEEAEHYSDEEAPAAAGEPKPPTAADGP
VKEEEEQEHGEEEEEQEEEATEGEGQGPSKEENKAEEKGNLAGERQSGDGQESTDDPETK
AGGKPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGHAQEEERPKGRNRKLWKDEGRWEHDK
FREEEQAPKSREELIAIYGYDIRNGGSSGDRSYRQRRPRQSMSPSRDKRWRDGGERPVRS
WQSGGGGGGGGLNRGGAPPPSSIHPSSTSPSSLPLSHAQRSNNPSRPPPARSRPPHQNQM
HLLPQQYRNNESNAPQMHPRERQGPKAPPEHTDRDRGVVRGGRVGGGRGGSSVVIEDVTV
SQGGVREQDLSVGTTAASQPGGYKSASPRRQQQEQRGSSDRPASGLAASSSTSDPSPQSS
AAATNREASPPTERPVERKSYSLARRTRSRPADLGSKQASVEESAAGGNNASSPSSVGGK
SWVGAGEGASHTGGGGGGGGGGGGGAAMTELDQDVARLSLQSWSQSPTSYMRSEMRGLPN
QMHMPGAQPQFSGMEEMGVGSNRAKRYSSQRQRAVPEPAPPMHLGVMEGHYYEPMSYQGP
IYAHGDGPAPIPPQGMLVQPEMHLPHPGLHPHQSGGPIANPALYGGPPVSLSPGQPQQLL
PPPPFYPPPGVMTFPYPAMYPSPQGQAQVTYGGVTYYDTMQQQAQPKPSPPRRTSQPVTV
KPPPPEVHFASE
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgcaggcggcggcgcgcgtctcaggacagcgaggacgaggacggg
tccggttcgggctcggacagcgggaggtccggctccccggccaccaagagccggggcaga
gagccggacccgcccgaggcggcggcggcccgcgtggaggcgaagagcgaggagtccgag
tgtgagagtgaggacggagtcggagaagctgtcctctccgactacgacagtgcagatcca
gaagagaacggctcccattcagagggagtggaggaggaagaggaggccgaacattacagt
gacgaagaagctccagcagcagccggcgagcccaaaccccccactgctgctgatggccca
gtgaaggaggaggaggagcaggagcacggtgaagaggaggaggagcaggaggaggaggcg
acagagggggagggacaaggaccgagtaaagaggagaacaaggccgaagagaaagggaac
ctagccggagagagacagagtggagacggacaggagtcgacagacgaccctgagacgaag
gccggaggtaaacctggtcagaagctcgacgatgacgaggacaggaagaacccggcttac
atcccgaggaagggtctgttcttcgagcacgacgtcagagggcacgctcaggaggaggag
agaccaaaaggccggaacaggaagttgtggaaggacgagggtcgctgggagcacgacaag
ttcagagaggaggagcaggcgcccaagagccgcgaggagctcatcgccatctacggctac
gacatccggaacgggggcagctctggagaccgatcgtacaggcagcgcagacccagacag
agtatgtctcccagcagagacaagcgatggagagacggaggagagcgtccagtccggtcc
tggcagagtggaggaggaggaggaggaggaggtctgaaccgaggaggagcccctccacct
tcatcgatccacccctcctccacatccccctcctctctcccactttctcacgctcaacgc
agcaacaatccctccagaccgcctcccgcccgcagcagaccgccccaccagaatcaaatg
cacctcctgccccagcagtacaggaataatgaatcaaacgcaccccagatgcatcccaga
gaacggcagggccccaaagctccacccgagcacacagatagagacaggggtgtggtcaga
ggagggcgtgttggtggtgggcggggcggttcttctgtggtcatcgaggacgtcacagtc
agccaaggaggcgttcgggaacaggacctcagtgttggaacgacggcggcgtcacagccg
ggcggttacaaatctgcatcgccaaggcggcagcagcaggagcagcgagggagcagcgac
agacctgcgtcgggattggctgcttcctcctccacctctgacccctccccccagtcatca
gctgcagcgaccaatcgggaagcctctcctcccaccgagcggccggtggagcgtaaatcg
tactcgctggctcgcaggactcgctctcgacccgccgacctgggcagcaaacaggcgtct
gtggaggagtcggcagccggagggaacaatgcctcctccccgagcagcgtgggagggaag
agctgggtgggagcaggtgaaggggcgagtcacacaggtggaggaggaggaggaggagga
ggaggtggaggaggagcggcgatgacagagctggaccaggacgtagctcgactgagtctg
cagagctggagtcagagcccgacgtcctacatgcgctctgagatgagaggccttcctaac
cagatgcacatgcccggagctcagcctcagttctccggcatggaggagatgggtgtcggc
tccaaccgggccaaacgttactcctctcaacgacagcgagccgtacctgagccggcaccg
cccatgcacctgggggtgatggagggacactactacgaacccatgtcctatcagggacca
atctacgcccatggggatggccccgcccccatcccgccccagggcatgctggtccagccg
gagatgcacctccctcaccccggtctccatccccaccaatcaggcggtccgatcgctaac
cccgccctgtacggaggcccacctgtttctctgtcgccagggcaaccacagcagctgcta
ccaccaccgcctttctaccctccgcctggagtcatgaccttcccttaccccgccatgtac
ccgagtccacagggtcaggcccaggtgacctacggaggcgtgacgtactacgacacgatg
cagcagcaggctcagcccaaaccgtctccgccccgccgcacgtcccagcccgtcaccgtc
aagcccccccctccggaggtgcacttcgcctcagagtga
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