Larimichthys crocea (large yellow croaker): 104937920
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Entry
104937920 CDS
T04659
Symbol
spg11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lco03400
]
104937920 (spg11)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104937920 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
104937920
NCBI-ProteinID:
XP_027140728
LinkDB
All DBs
Position
XII:3219033..3240702
Genome browser
AA seq
2429 aa
AA seq
DB search
MLEAQRTDGGSTEVCVIPENRQCGEVADIRRAEFAPGGSLLGCLRVSGRLVLWDPADRDA
PPAAVDGCYTDFCWEEAAVPGPGGSFRLLAAGAPCELKLLEVEASTSASTSASTSASTCL
HRVRECPSDQLLEAVRERDSSVSELQSVRVLSFAAGLCCVLLDCDWLLQLRWQRAEEEPQ
TLSCCRIQLTDSGRHDAVHHSVCRETLFVLSSSGLISVFSISDGSLLASVDLPAYLSSGP
ADDDLVSSPPSFSSFCLLQVSADLSTAVAVTRSHTAVAVDLDHYFRMYPDHCCVPLPPLD
LLSGPTTRDQGQACRAPNAACSPLGSTFILTGKTAAFSDGNEASWEARLASMYSRAQQAA
APSSSTRAAGTSWSSSLLHLESHQAPSSVHSRAPHGGVTVAFSAPESSAPSLLTVSEFSA
QLTFVTPGNTQTTVALWDLESGSVSYHRAEGEAAPVQRCGERQHRLLLKSSGVFLVLFSV
SQQDLLSRLMLFGSAATVDAVCHLNSWGRCSIPIHALQAGLKNRQLDTVDFYLKSKENIL
NPAAEQPAASTLSLSERVQQLCPALDLLCSAVRDSNSDAQSRQFSEQLLNITVSFVNTQI
RSVLSNTHYEDAGVQSCVDVLDRYVTELRRYMKRFPWPVGGDTSSSSSANHAQVEVEEEE
EEWRQLQTEEVVRHAILTNQIPRAQAVLRRRSRPEQRLSALRMEGLRQVFCCLQRRDLQT
ANTLLTNMGFSVKKQLHSICLYTDDQDLRDFVVEELSGRSYFPEDEMQSVAFIKQMEELG
SLPAARCPAKTPSQRLSVLRLHSVVQMVHQEAGCGGDEVLEDLLGPKRSEEDCVLWRNLR
LDWVRNWDQSCQMAVLLSRLQHTDLTSCDSAVLWRYLTALHDQRRVVDWIDWNGETSGAS
RWPELTPELVNNNTVCSTYMRENILDLLARRRLFIPEELADLEQLLWRLAQGGGVMSSSP
PIPQYRSPLGLDLHSLFITFCLDHSLQYLLYTYLEHYRLTPRNCPLLTNQSLSESQPWFE
MLVKIQEITRDLSDPGLVFQASLTSAQVLLPGSQASLSSLLLEGHSLLALAAVMFAPGGI
DQVVVQGERSGRSERTVDPQLLKMALAAHPKLRAALFPAGPRTGNSSSSDVSVYHLLQSL
HPLDPSRLFGWQAANTLSSTETSELPHFSSPHLVSRFALVEHLDFLYYLRHGRPSFAYAT
FLVQQLSGCSDVPLLLQHTWQQVYRLALQCFNVPSVASASVCFCELLGVCSLKLRVDLRA
MNAILQHWSQHNTHTAAAQQLHTLVSKGVKLAEAEPGAAEELIGYLEAAVTDNLEQKGIS
RSSYEAAQEWALPVQFCQLHALQLSSVYPAHCADDGQFIHFLLFVQLHNFPPPQVRSLAA
QFGPALQAHLSLAFQDLQVCSQMKTCGSEDRSRSLSSKEATVSVEHPTELFQVLLQSQEE
AGPCRYLLQEALVQRCPTLAVMAACQQEAELLPCLCVWVLTSVDDVTAGEATSHLVEAPE
HHEWTLHDLSIVWRTLLGRGHVRPLLRGFELFQRDCPLVLVLRMFELCCDYRNFSEAKAK
LLDFQRTLIALRNGGPAPSGGLPLQWVESQASVLLLTMLQRCSSQYDLHRLLQLLADVDK
LLKSNGPDFRKLSQLSQLLQGSEVSLSPRLLQCSSPSDQQEEFQAAVDALQAKGRYSQAR
QVAQLAGLSVHRLLLSQLLQEVNSQKSKRQWRRLETRVSFWRKCHEQLKADNTDPESASQ
FFLSQAEPGSTESSGTSEAQTELLDIQERCLLLCLAAHWLSLLSPAPVDKLESLEKKLWS
SRVFQRILTVAMEKESVFNLPPAAITPEMNTYEVLMKEFSFSNISDLNTEQCLSLEGAEE
QQELRTDSDLSPEENILTQLVGQLLDEGSIHEASRVCRYFSLHHPDMWVVLRCRGLASGE
LNPEPQEETSEALPKKSMTSSASISSLLSFVMLPLPDDEVATQLQKLVDQCRHGSSYCKQ
VLSLYQLSKELQCSFSEICTEEPRSVLEKLLLSDQPERFRKAQAFIRSQGLSADAVAELV
SSAVVQALLASTQELQPERQVFRPSEGRDSLVQLIKLCDDPNLVGVKLLENLNTVPLRDL
SCIVELLIVAHDCFSLTCNMEGIVRVLQAARHLSHTYLSPGEHYSLLVRLLTGIGRYNEM
TYIFDLLHQNHRFEMLLRKKVDTDRGQSSSLKTALLDYIKRCLPADSEKHNMVALCFSMR
REIGENHEMAARTQLKIIESQAWVVTPDLKSSLVKVLGLLKDAAESFSKDSCVRQATRCV
RTAKLVALQLHFLNQGSDLRIINLRPAELPNAVTSLPRCYQVFVVSEAYSYSPDWAEVLY
QKVILGGDFVYLEELKRHRPLTSGLFEDIFKKLDGVPSRATPNVKRLLTHCDDVYSRYRL
AYQQNLYDVTKTLLQDANTASYLSDKLAS
NT seq
7290 nt
NT seq
+upstream
nt +downstream
nt
atgctggaggctcagcggacggacggcggctccactgaggtgtgtgtcatcccggagaac
cggcagtgcggagaggtagcggacatccggagagcggagttcgctcctggaggctctctg
ctcggatgtctccgggtcagcgggcggctggtgctgtgggaccccgcggacagagacgct
cctccggccgcagtggacggatgttacacggacttctgctgggaggaggcggccgtcccc
ggccccggcggcagcttcaggctgctggctgctggagctccgtgtgagctgaagctgctg
gaggtggaggcctccacctctgcctccacctctgcctccacctctgcctccacctgtctg
caccgtgtccgggagtgtccctcagatcagctgctggaggcggtcagagagcgggacagc
agtgtctctgagctgcagtcggtgcgcgtgttgtcgtttgccgctgggctctgctgcgtg
ctgctcgactgtgattggctgctgcagctgcgatggcagcgtgcggaggaggagccgcag
acgttgtcctgctgccgcatccagctgactgacagcggcagacacgatgctgtccaccac
agtgtctgcagagagacgctgttcgtcctcagctcctccggactcatatctgtgttcagc
atctctgacggcagtctgctggcgagcgtcgacctccctgcgtacctgagctccggcccg
gcagacgacgacctcgtctcctctcctccctccttctcctccttctgcctcctccaggtg
tcagctgatctcagtacagccgtcgcggtgactcggtctcacaccgctgtcgccgtcgat
ctcgaccactactttaggatgtatccggaccattgctgtgtgccgctcccccctctcgac
ctcctctccggcccaacaacaagagaccaaggacaggcctgtcgcgctccaaatgcagcc
tgctcgcccctcggctcgaccttcatactgaccggtaaaaccgccgcgttctcagacggg
aatgaagcctcctgggaagctcgtctggcttccatgtacagcagagcccagcaggctgca
gctccgtcctcctccacccgggccgctgggacctcctggtcctcctccctcctccacctg
gagtcccaccaggctccatcttcggtccacagcagagcgccgcacggcggggtgacggtc
gctttctccgcccctgagtcgtccgctccgtctctgctcactgtgtctgaattctcggcc
cagctgaccttcgtcacccccggcaacacacagaccacagtggccttgtgggatttggag
tccgggagcgtgagctaccaccgggcggagggcgaggcggcgccggttcaacgctgcgga
gagagacagcaccgactgctgctgaagagttccggtgtcttcctcgtcttgttctcggtg
tcccagcaggacttgctcagcaggttgatgttgttcggcagcgcggcaacagtagacgcg
gtctgtcacctgaacagctgggggcgctgctccatccccatccacgccctgcaggccggg
ctgaagaaccgtcagctggacacggtggacttctacctgaagagcaaagagaacatcctg
aaccctgcagctgagcagccggcagcctccacgctgagcctgagcgagcgtgtgcagcag
ctgtgtcctgcgttggacctgttgtgttcggccgtcagagattcaaacagtgacgctcag
agccgacagttctctgaacagctgctgaacatcacagtgagcttcgtcaacacacagatc
cgctcggtcctgtccaacacacactacgaggacgccggcgtgcagagctgtgtggacgtt
ctcgaccgttatgtcactgaactgcggcgctatatgaagagattcccctggcctgtaggg
ggcgacacctccagcagcagctctgctaaccacgctcaggtggaggtggaggaggaggag
gaggagtggaggcagctgcagacagaggaagtggtccgtcacgccatcctgaccaatcag
atccctcgagctcaagccgtcctgcggcgtcggagccggcccgagcagcgtctgtcagct
ctgaggatggagggtctacgtcaggtgttctgctgcctgcagcgccgagacctgcagacc
gccaacacgctcctcaccaacatgggtttcagtgtgaagaagcagctccacagtatctgc
ctctacaccgatgaccaggacctcagggacttcgtggtggaggagctgtcagggcggagt
tacttcccagaggacgagatgcagagcgtggcgttcatcaagcagatggaggagttggga
tctctgcctgcagctcgctgcccggcaaagacgccgtcgcagagactctctgtgctccgt
cttcacagcgtggttcagatggtccatcaggaggcgggctgtggtggtgacgaggttctg
gaagatctgctgggtccgaagaggtccgaggaggactgcgtgctgtggaggaacctccgc
ctggactgggtgaggaactgggaccagagctgccagatggccgtcctcctgtccagactg
cagcacacagacttgacgtcctgtgactcggcggtgttgtggcgttacttgaccgccctg
cacgaccagcgccgggtggtcgactggattgactggaacggggagacctccggcgcctcc
cggtggcctgagttaaccccggagctggtcaacaacaacacagtctgcagcacctacatg
agggagaacatcctggaccttctggccaggaggcgtctgttcatcccggaggagctggca
gacttggagcagctgttgtggaggcttgctcagggtggaggtgtgatgtcctcgtcccca
cccatccctcagtaccgctcccccctcggcctcgacctccacagtctcttcatcaccttc
tgcctggaccacagcctgcagtacctgctctacacctacctggagcactacaggttgaca
cccagaaactgtcccctcttgaccaatcagagcctgtctgagagccagccgtggttcgag
atgctggtgaagatccaggagatcactagagacctgtcagatccaggactggtcttccag
gccagtctaaccagtgctcaggtgctgttaccgggcagccaggcgtctctcagcagtctt
ctgttggagggtcacagtctgttggccctcgctgccgtcatgttcgcccccggaggaatc
gaccaggtggtggttcagggtgaaaggtcaggcaggtcagagaggacggtcgacccccag
ctcctgaagatggcgctggccgcccaccccaaactgagggccgccctgttccccgccgga
cctcggacaggaaacagctcgtcctctgacgtctccgtctaccacctcctgcagtcgctc
caccctctggacccgtcccggctgttcggctggcaggcggcaaacaccctcagctccacc
gaaacgtcggagctgcctcatttctccagccctcacctggtcagcaggttcgctctggtg
gagcacctggacttcctgtattacctccgtcacggccgaccgtccttcgcctacgccacc
ttcctcgtccagcagctgagcggctgcagcgacgtcccgctgctgctgcagcacacctgg
cagcaggtgtacaggttggccctgcagtgtttcaacgtgccgtctgtggcatcagcgagc
gtttgtttctgcgagctgctgggagtctgcagcctgaagctgagggtcgacctccgagcg
atgaacgccatcctgcagcactggagccaacacaacacacacaccgctgctgcacagcag
ctacacactctggtgtctaaaggtgtaaagctggcggaggcggagcctggagcagccgag
gagctgattggctacctggaagccgcagtgacggacaacctggagcagaagggcatcagc
aggtcgtcctacgaggcggctcaggagtgggcgttgcccgttcagttctgccagctccac
gcgctgcagctcagctccgtttaccccgcccactgcgctgatgacggacagttcatccac
ttcctgttgtttgtccagctgcacaacttcccgccgccgcaggtgaggtcattggccgct
cagttcggccccgccctgcaggctcacctgagtctggcatttcaggacctgcaggtttgc
agtcagatgaagacttgcggctctgaggaccgctcgaggtctctgagctccaaggaggcc
accgtgagcgtggagcaccccacggagctgttccaggtcctcctgcagagccaggaggag
gcgggaccctgcaggtacctcctgcaggaggcgctggtgcaacgctgcccgacactggct
gtaatggcggcatgtcaacaggaggcggagctgctgccgtgcctgtgcgtgtgggtgttg
acctccgtcgatgatgtcacagctggagaagccacctcccacctggtcgaagcgcccgag
caccatgagtggacactgcacgacctgtcaatcgtctggaggacactgctggggcggggc
cacgtcaggcccctcctgcgaggcttcgagctcttccagagggactgccccctggtgttg
gtgttgaggatgtttgagctgtgttgcgactacaggaacttttctgaggccaaagcgaag
ctgctggacttccagaggacgctcatcgctctcagaaatggtggtccggcgccctccggt
ggactccccctgcagtgggtggagagtcaggcctccgtgctgctcctcaccatgctgcag
cgctgctcctcccagtacgacctccaccggctgctgcagctcctggccgacgtcgacaaa
ctcctcaaatccaacggtccagacttcaggaagctgagtcagctcagtcagctgctgcag
gggtcagaggtcagcctttctccgaggctgctgcagtgcagttctccctccgaccagcag
gaggagttccaggctgcggtggacgctctgcaggccaagggccgctacagccaggcccgg
caggtcgcccagctggccggtctgtccgtccaccgcctgctgctcagccagcttctccaa
gaagtaaactcccagaagtccaagcggcagtggagacggctggagacacgagtcagtttc
tggaggaaatgtcacgagcagctgaaagctgacaacactgatccagagtcggcctcccag
ttcttcctgtcacaggctgaacccgggtcgacggagtcgtccgggacctcagaggctcag
acggagctgctggacatccaggaacgctgcctgctgctctgcctcgccgctcactggctc
tcccttctcagcccggctcccgtggacaaactggagagcctggagaagaagctgtggagc
agccgggtcttccagcgcatcctcaccgtcgccatggagaaggagagcgtcttcaacctg
ccgccagccgccatcacgccagagatgaacacatacgaagtgctcatgaaggagttctcc
ttctccaacatatcggacctgaacacagagcagtgcctcagcctggagggagcagaggag
cagcaggagctgcgtaccgactcggatttgagtccagaggagaacattctgacccaactc
gttggtcagttattagatgaaggcagcatccatgaagccagccgggtctgccgctatttc
tccctgcatcacccggacatgtgggtggtgctgcgatgccggggtctagcctctggagag
ctgaaccctgaaccacaagaagagacgtcagaagctctgcccaagaagagcatgaccagc
tctgcctccatcagcagcttgttgtccttcgtgatgctccccctccccgacgacgaggtc
gccactcaactccagaaactggtggatcagtgtcgccacggcagcagctactgcaaacaa
gtcctcagcctctaccagctctccaaggagctccagtgttccttcagcgagatctgcacg
gaggaacctcgctcggtgctggagaagctgctgctgtcggaccagccggagcgcttcagg
aaggctcaggccttcatcaggtctcagggtctgtctgcagacgccgtggccgagctggtc
tcctccgccgtggtccaggcgctgctggcctccacccaagagctgcagcccgagaggcag
gtgttcaggccgtcggagggtcgggactcgctggtccagctgatcaaactgtgcgacgat
ccgaacctggtgggagtcaaactgctggagaacctcaacactgttccactgcgagacctg
agctgcatcgtagagctgctgatcgtggctcacgactgtttcagtctcacctgtaacatg
gaggggatcgtcagagtcctccaggccgcccgtcacctgagccacacctacctctccccg
ggagagcactacagcctgctggtgcgtctgctgacgggtatcggcaggtataacgagatg
acgtatatcttcgacctgctgcatcagaaccatcgctttgagatgctgctgaggaagaaa
gtggacacggacagaggacagagctccagtctgaagacggctctgctggattacataaag
cgctgcctccccgcagacagcgagaaacacaacatggtggcgctgtgcttcagcatgagg
agggagatcggggagaaccacgagatggctgcgaggacgcagctgaagatcatcgagtct
caggcctgggtcgtcactccggatctgaagagctcgctggtcaaagtgttgggtctgctg
aaggacgccgcagagagcttctccaaggactcgtgtgtgcgtcaggcgactcgctgtgtt
cggacggcgaagctcgtcgctctccagcttcacttcctgaaccagggatcggacctgcgc
atcatcaacctgagacctgcagagctgccgaacgccgtcacgtcgctgccgcgatgttac
caggtgttcgtggtgtcggaggcgtacagctacagtccggactgggcggaggttttgtac
cagaaggtgatcctgggcggagacttcgtttacctggaggagctgaagcggcaccgcccg
ctcacctccggcctgttcgaggacattttcaaaaagctggacggcgtccccagcagggcc
acgcccaacgtgaagcgcctgctgacgcactgtgacgatgtgtacagccgctacaggctg
gcctaccagcagaacctgtatgacgtcaccaaaacgctgctgcaggacgccaacaccgcg
agctacctgagcgacaagctggccagctga
DBGET
integrated database retrieval system
