Larimichthys crocea (large yellow croaker): 104938071
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Entry
104938071 CDS
T04659
Symbol
ncbp1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03013
Nucleocytoplasmic transport
lco03015
mRNA surveillance pathway
lco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104938071 (ncbp1)
09122 Translation
03013 Nucleocytoplasmic transport
104938071 (ncbp1)
03015 mRNA surveillance pathway
104938071 (ncbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104938071 (ncbp1)
03041 Spliceosome [BR:
lco03041
]
104938071 (ncbp1)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
104938071 (ncbp1)
Spliceosome [BR:
lco03041
]
Common components
Common spliceosomal components
Cap binding complex
104938071 (ncbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
DUF1690
Importin_rep_6
DUF2524
FapA
Vfa1
FANCI_S4
CC_BshC
RRN3
AAA_11
OmpH
Exonuc_VII_L
Uso1_p115_C
Motif
Other DBs
NCBI-GeneID:
104938071
NCBI-ProteinID:
XP_010752713
LinkDB
All DBs
Position
I:12464788..12490010
Genome browser
AA seq
795 aa
AA seq
DB search
MSRRRHSDENDGGQAHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCSVARLLPEKLSVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKNNL
YNEAVHLVRFLSDLVNCHVIAAPSMVAMFENFISVTQEEDVPQVRSDWFVYVVLACLPWV
GKELYEKKDVEMDRLLSQIEGYLKGRVKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPGHMPDAQYPMPRVVFRMFDYTDAPEG
PVMPGSHSVERFVIEENLHCIIRTHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCIDRLINWFSHH
LSNFQFRWSWDDWSDCLAVDIDKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSALIPAE
PIFVYKYEDESSSSLPGHSMSITVGNAIKNRASNEEILTILKEVPNPNQEDDDDEGESFN
PLKIDVFLQTLLHLAAKSFSHSFSALGKFHEILKNLTESDEGKLHILKVVYEAWRNHPQM
ISVLVDKMIRTQIVDCAAVANWLFSQDMAHEFTRLFVWEILHSTIRKMDKHVQKIQQELE
EAKDKLEKQQHKRRDSGDDEDMDKASEDEEGQLEEQIERLQEKVESAQSEQKNLFLVIFQ
RFIMLLTEHLVRCETGSVDISTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAELD
PHILAVYQQFCALQL
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggagacgccacagcgacgagaatgacggaggtcaggcccacaaaaggaggaga
acatcggagcccattgaaatcgaagaccgcctggagtcactgatctgtcgcgtgggggag
aagagtacgtcctctctggagagcaacctggagggcctcgcgggcgtgttggaggccgat
ctccccaactacaaaaacaaaatcctgcgcatcttatgttctgtcgcccggctcctaccc
gagaagctgagcgtgtacacgaccttagtcggcctcctgaacgccaggaactacaacttc
gggggcgagtttgtggaggcgatgatcagacagctgaaggagacgctgaaaaacaacttg
tacaatgaagcagttcacctggtgcgttttctgtcagacttggtcaactgtcatgtgatc
gccgcgccgtcgatggtggccatgttcgaaaacttcatcagtgtaactcaagaggaagac
gtgccacaggtgcggtcggactggtttgtgtacgtcgtgctggcctgtctgccgtgggtc
ggtaaggagctttacgagaagaaggacgtcgagatggaccgacttctcagccagatcgaa
ggctatctcaagggccgagtaaagacgcacgttcccatgctgcaggtgtggacagcagag
aagccccacccacaagaggagtacctggactgcctctgggcccagatccagaagctaaag
aaagaccgctggcaggagcgccacatccttcgtccatacatcgccttcgacagcgtgctg
tgcgaggccctgcaacacaacctgcctcccttcaccccaccgggccacatgcccgacgcc
cagtaccccatgccccgggtcgtcttccgcatgttcgactacaccgacgccccagagggt
cccgttatgcccggcagccattctgtggagagatttgtcatagaagaaaacctgcactgt
atcatcaggactcactggaaagagaggaaaacatgtgctgcccagttactcagctatcca
gggaagaacaagattccactcaactatcacatcgtggaggtgatctttggagaacttttc
cagctgccctgtccgcctcacatcgacgtcatgtacaccacgttgctcatcgaactctgc
aaactgcagccaggatctttgccacaagtcttggctcaagccacagagatgctctacatg
agactggacaccatgaacaccacctgcatagacagactaatcaactggttttctcaccat
ttgagcaacttccagttcagatggagctgggatgactggtctgactgcttggccgtggat
atagacaagcccaagcccaagtttgtgaaagaggttctggagaagtgcatgagactttcg
taccatcagcggatagtggacatcgtccctccaaccttctcagcgctcatcccagctgag
cccatctttgtctacaaatacgaagacgagagctcatcttcgttaccgggtcacagcatg
tccatcaccgtcgggaacgccatcaagaaccgagcgtccaacgaagagatcctgaccatc
ctcaaagaagtgcccaaccccaaccaggaagacgatgacgacgagggcgagagcttcaac
cctctgaagatcgacgtgttcctgcagactctgctccacctggctgccaaatccttcagc
cactccttcagcgcccttggcaagttccacgagattctgaagaacttgacagaaagcgac
gagggcaagcttcacatcctcaaggtggtttatgaagcgtggaggaatcacccacagatg
atctcagtgttggtggacaaaatgattcggacgcagatcgtggactgcgctgctgtcgcc
aactggctcttctctcaggacatggctcacgagttcaccagacttttcgtttgggaaatt
ctgcactcgaccatccgaaagatggacaaacatgtccagaagatccagcaggagttggag
gaggccaaggacaaactggagaaacagcagcataagaggagggacagcggcgacgacgag
gacatggacaaggccagcgaggacgaggagggtcagctggaggagcagatcgagaggcta
caggagaaggtggagtcggctcagagcgagcagaagaacctcttcctcgtcatcttccag
cgtttcatcatgttgttgacggagcacctggtccgctgcgagacgggcagcgtcgacatc
agcacgccctggtacaaaaactgcatcgagcggctgcagcagatcttcctcatgcaccat
gtgaccatccagcagtacatgggaaccctggagaacctgctgttcaccgccgagctcgac
ccgcacatcctggccgtctaccagcagttctgtgccctccagctctga
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