Larimichthys crocea (large yellow croaker): 104938479
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Entry
104938479 CDS
T04659
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104938479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104938479
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104938479
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104938479
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104938479
NCBI-ProteinID:
XP_010753178
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All DBs
Position
XXI:complement(5488147..5495392)
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AA seq
523 aa
AA seq
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MFGARKKFVEFVEVVDNDFTDESMYYNQSSMFPHRSDKDMLSSPSPSSSGQLSQLGASLY
GPQSALGFSVRGMGSNTPQLNRNLTQGTLPPSHITPTTGVPAMSLHTPPSPSRGTLPMNS
RNMLNHSQVGQGIGMSGRTNSMGSSGLGSPNRSSPSIICMPKQQPARQPFTINSMSGFGM
NRNQAFGMNNSLSSNIFNGTDGSENVTGLDLTDFPALADRSRREGTGNPTPVLNPLAGRA
PYVGMVTKPSTEQTQDFSIHNEDFPALPGPNYKDPTLNNDDSKTNLNSTSKSTSNADGPK
FPGDKTASAQNNNQKKGIQVLPDGRVTNIPSGMVTDQFGMIGLLTFIRAAETDPGMVHLA
LGSDLTTLGLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLA
RYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNAYERG
TYYFFDCLNWRKVAKEFHLEYDKLEERPHVPTTFNYNPAQQAF
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgctagaaagaaatttgtagagtttgtcgaggttgtcgataacgactttact
gatgaaagcatgtactacaaccagtcctcgatgttcccacatcggtcggacaaagacatg
ctttcctctccctcgccgtcgtcgtcgggtcagctgtcgcagctcggcgcaagtttgtac
ggtccacaaagtgcactcggtttctcggtaaggggcatggggagcaatacgcctcagtta
aaccgaaatttaacacaaggcacgctaccaccaagtcatatcacccccacgacaggggtc
cccgccatgtccctccatacccctccatcaccaagcagggggacattaccgatgaactcg
aggaacatgctgaaccactctcaggtcggtcaaggcatcggaatgagcggcaggaccaat
agtatgggcagctcagggctgggcagccccaaccgcagctcgcccagtatcatctgtatg
cccaaacagcaaccagcacgccagccattcaccataaacagcatgtcaggatttggtatg
aaccgcaatcaggcttttgggatgaacaattcattatcaagcaacatcttcaatggcaca
gatgggagtgagaatgtaacgggactggatctgacagacttccccgcgttagcagacagg
agtcggagagaagggactggaaacccaacaccggtgctcaacccactggctggacgggct
ccttatgttggcatggtgacgaagccatcaactgaacagacacaggatttctccatccat
aacgaggacttccctgcactgcctggcccaaactataaggaccccacgttgaacaacgac
gacagcaaaactaacttgaactccacgagcaagagcacatccaatgcagatgggcccaag
ttccccggagacaagacggcctcagcacagaacaacaaccagaagaaagggatccaggtg
ttgcccgatggtcgggtgacgaacattccctcaggaatggtaacagaccaattcggcatg
attggcctgctgacgtttatccgggcagcggagactgatccgggaatggtccatctggca
ctaggaagtgacctcacgacactgggactcaacttaaactcaccagaaaacttgtaccct
aagttcgcctctccttgggcttcatcaccctgtcgacctcaagacattgacttccatgtt
ccctctgaatacttaaccaatatccacataagggacaagttggcggcaattaaactggct
cgatatggtgaagacctgttgttctacttgtactacatgaatggtggagacctactacag
cttctggcagcagtagagctctttaaccgggactggaggtaccacaaagaagagcgggtt
tggataacaagggcgcctggcatggagcctacactgaagaccaacgcctatgagagggga
acctactacttctttgattgtcttaactggaggaaagtagccaaggaatttcatctggag
tatgacaagctggaggagaggccacacgtgccaacaacattcaactacaacccagcccag
caggccttctaa
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