Larimichthys crocea (large yellow croaker): 104938537
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Entry
104938537 CDS
T04659
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104938537 (taf1b)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
104938537 (taf1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Zn_ribbon_RRN7
Rrn7_cyclin_N
DUF5816
Motif
Other DBs
NCBI-GeneID:
104938537
NCBI-ProteinID:
XP_019110220
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Position
VI:complement(23267197..23272266)
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AA seq
635 aa
AA seq
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MFEANMDEEWTAGYREPCVQCSAVDWGVSDEGRFYCRSCHNVIERTREVVDPTFTPGSSR
VSTIGKGSRTKKTERGHQWNICEGFQFILKKQAEALIRLGVSPRLKDEVLCELWRLYLQK
SGQAFTDRPLTSFRVNVRGLDSDSESAAEFSGRSVSDTDGETVASSTVLSNAGSSVDPPP
CSGSSDAVSYLTAQQLRSSSLMTMRKTLALIHIALVWIREALTLSDLLRLVNEGHVPYVN
AFEELPDEMKLEGKDHLIFKVETIPSHESVHKEAQALLHVLQLPPFPPISCQSLLHPALL
SLRYLTELNLPDELHLWVCRLMEQAGLEDQTVHTVDPLTLYVLPRYGVQTAALIVVTMKA
VFGVDDLTEWEFSGQTGEQDDSGNLFNLRRWYKLLQAALIRAQQNKEHDTARKQWRSKRD
VSTSRNRKWVAVKKKRTAEQVQICFERLSSRPAGVERIGPSSFRFCWGDEDGADGPGLHH
LTLDGVLTLKHGVLTPSHSTYWHPALQQCNYWRCRSHYLKFEPTLPRMFVWLLKLFSFLL
DVKPASLYEEVLRVERRVFGSRTPWRKTETKTETKTKTKTKTKCRPKTKTKTRPETETRP
ETKTKTKTKCRPKTKTKTRPETETRPETKTAKTDR
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaagcgaacatggacgaagagtggacggccgggtacagggagccctgtgttcag
tgctcagcggtggattggggagtttcagacgaaggtcgcttctactgcaggtcctgtcac
aacgtcatcgagaggaccagagaggtggtggacccgaccttcactccaggctcctccagg
gtcagcaccatcggcaaaggatccagaaccaagaagacggagcgaggtcatcagtggaac
atctgtgaaggtttccagttcatcctgaagaaacaggcggaagctctgatcaggctggga
gtcagcccacgactgaaggacgaggtgctgtgtgagctgtggagactttacctgcagaag
agtggacaggcgttcacagatcgcccgctgacgagcttcagggttaacgtgcgaggtctg
gactcggactcggagagcgccgctgagttttcgggcagatcggtgagtgataccgatgga
gagacggtcgcgtcgagcacggtcctatcaaacgcaggcagctccgtggatccaccgccg
tgctcgggctcgtcggacgccgtcagctacctgacagctcagcagttgaggagctccagt
ctgatgaccatgaggaagactttggctctgatccacatcgctctggtctggatccgtgag
gcgctgacgctcagcgacctgctcaggctggtgaatgaaggtcacgtcccgtacgtgaac
gccttcgaggaacttcctgatgagatgaagctggaaggcaaagatcacctgatcttcaaa
gtcgagacgatcccgtcccacgagtccgttcataaagaggctcaggctctgctccacgtc
ctgcagctgcctccttttcctccaatcagctgccagagtctgctgcacccggctctgctc
agcctgcgatacctgaccgagctcaacctgcccgacgagctccacctgtgggtctgcagg
ctgatggagcaagcgggtctggaggatcagacggtgcatacggtcgacccgttaactctc
tacgtcctgccacgctacggcgttcagaccgccgccctcatcgtcgtcaccatgaaggcc
gtgttcggcgtggacgacctcactgagtgggagttctccggtcagacaggtgagcaggac
gactcaggaaacctgttcaacctgaggaggtggtacaagctgctgcaggcggctctgatc
cgagctcagcagaacaaagagcacgacacggccaggaaacagtggcgatccaagagagac
gtgtccacgagcagaaacaggaagtgggtcgccgtgaagaagaaaagaacagctgagcag
gttcagatctgtttcgagaggttgtcttctcgcccggcgggcgtcgagcgtattggcccg
tcaagcttcaggttctgttggggggacgaggacggagcggatggtcccggtctgcaccac
ctgaccctggatggagttctgaccctgaagcacggcgtcctgacgccctctcactccaca
tactggcacccggcgctgcagcagtgcaactactggcgctgcaggtcgcactacttgaag
ttcgagccgacgctgcctcgcatgttcgtctggctgctgaagctcttcagcttcctgttg
gacgtgaagccggcgagcctttacgaggaggtgctgagggtggagagaagagtcttcgga
tccagaacaccatggaggaagaccgagaccaagaccgagaccaagaccaagaccaagacc
aagaccaagtgcaggcccaaaaccaagaccaagactaggcctgagaccgagaccaggccc
gagaccaagaccaagaccaagaccaagtgcaggcccaaaaccaagaccaagactaggcct
gagaccgagaccaggcccgagaccaagaccgcaaagacagacaggtga
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