Larimichthys crocea (large yellow croaker): 104938575
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Entry
104938575 CDS
T04659
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X2
KO
K08133
collagen type XIV alpha
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lco00535
]
104938575
Proteoglycans [BR:
lco00535
]
Extracellular matrix (ECM) proteoglycans
Others
104938575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
VWA_3
NDNF
Motif
Other DBs
NCBI-GeneID:
104938575
NCBI-ProteinID:
XP_019112440
LinkDB
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Position
XIII:20052482..20177532
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AA seq
1784 aa
AA seq
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MRMLSMGQISWCLWAPLVLLAIVSHVPTNAQDQVPSPRRLRFKVLSPGKLLVSWKEPKGD
FDSYLFLYNSMPGGQQREIIASKSDTKVLITDYSPSKDYIVSVIAVRGNEQSRPLHGRHK
AERGESDEGHKTEPQRLPDSVVPPEDANEISGVDQFVCHTEAIADIVILVDGSWSIGRLN
FRLVRMFLENLVNAFDVGIDKTRIGLAQYSGDPRIEWHLNAFSSKDAVIDAVKNLPYKGG
NTLTGLALTYIMENCFKPESGSRPGVPKIGILITDGKSQDDVIPPAESLQNAGVELFAIG
VKNADENELHSIASEPDNTHVYNVADFNIMSSIVEGLTRTVCEQVEQQDKDIKQKQTPET
TGAPLDLVTSEVTARSFRVSWSHAPGNVEKYRVVYYPSQGGEPQEVVVEGGETSAVLEHL
SSLTEYQVAVFAVYANDASEALRGSETTLALPTVTGLQLYDVTQSTMKARWDSVDGVSGY
MLLYAPLKESGDLDEKEIKLSDAVTEIELGALVPHTEYTVTVYAMYGEEAGDPITNQETT
LPLSPPTNLQFSDITHNSAHISWDPAPKGVKGYRIMWVKTDGLTTQEVEVGVKNSYDLSD
LTSLMEYGVAIFAQYDEGESAALTDAFTTTPVPGPLNLRSSDVSTDSFQVSWDHSANDIV
LYRLSWAPFTGGDTKEVMLSGTENRYNLIALSPSTEYEVMLTAIFKDQSESDTISVIETT
LAETTTIATTTTMARQAVRNLQLSDETTQSLEASWELEDPHVESYRVTYAGLRGNHEEES
VLLPVSQRRAVLQPLLSDTQYKVTVTPVYSDGQDGISVSARGATLPLLSPGNLRVSEEWY
NRFRVTWDPPQSPTMGYRIVYQPIYVPGPILERTVGEDVNSMLLLNLLSGTEYSVQVTAS
YPAGQSEPLLVNAKTMFLGVSGLSTYQVRYNSMCVQWQPLLQATLYRVSIQSPLNGQKQE
VSLGGGASRQCFYDLSPSSQYQISVHTQMQGMEGPSVSITDMTLPEPTQAPTEAPTTEPP
PTIPPAKEVCKEAKADLAFLVDGSWSIGDDNFMKITRFLYSTMGSLDLIGPDGTQVAIAQ
FSDDARTEFQLSSHGNKEALLEAIQKIRYKGGNTKTGRAIKHVKESIFTAEAGARRGVPK
VLVVLTDGRSQDDVNKVSKEMQMDGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLD
AVKKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMMEKFGLVEKEYGTIPGVSLEPGSF
NSFPCYRLHRDALVSQPTRYLHPEGLPSDYTISMMLRLLPETPQEPFALWEILDKDNEPL
VGLILDNSGKTLTFFNNDYKGEFQTVTFEGNEIKKIFHGSFHKLHVTISKTTVKVVLDCS
VVGEKSISAAGNITTDGVEILGRMVRYRGRRDNSAPFQLQMFDIICSTSWASRDKCCELP
ALRVEEQCPSMPHACTCSQDSKGPPGPSGPPGGPGVRGARGERGEPGLTGPQGPVGEIGP
PGPSGPPGPQGPSGLSIQGPPGAAGAKGERGANGPAGQMGVPGSTGSPGRDGPPGTRGLP
GNIGPQGRQGPPGPIGTPGAPGAPGSGGSAGAQGDQGLPGPAGTKGDKGERGDVQSQAAV
RAIARQVCEQLIQSHLSRYNSILNQIPVQSSVSVRTVPGPPGEPGRRGSPGPQGEQGPSG
RPGFPGSNGQSGRPGERGLPGEKGDRGSPGIGTQGPRGPPGPPGLPGEGRTGSQGPPGRP
GNPGTQGRSGNPGSTGPAGPPGYCDQNSCLGYNVGVQQDYGNDY
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgttgtcaatgggacagattagctggtgtttgtgggctccactggtgttactg
gccatagtttcccatgtccccactaatgcacaggatcaagttccatctccgaggaggctg
cgtttcaaagtgctgagcccaggcaaactccttgtttcatggaaggagccaaaaggagac
tttgacagctatctattcctctacaacagtatgccaggtggtcagcagagagagatcata
gcatctaaatctgacactaaggtgttgataacagactacagcccttctaaggactacatc
gtcagtgtcatcgctgtgagaggcaatgagcagagcagaccacttcacggcagacataaa
gctgaaagaggtgagagtgacgaaggacacaagaccgagccccaaaggctgcctgattca
gttgtacctcctgaggatgccaatgagatctctggagtggatcagtttgtgtgccacact
gaggccatcgcagacattgtgatcttagtggacggctcctggagtattggtcgactcaac
ttccgactggttcgcatgttcttggaaaaccttgtcaatgcctttgatgttggcatcgat
aaaacgaggataggtctggctcagtacagtggtgatcccaggatagagtggcatctcaat
gctttctccagtaaagatgccgtcatcgatgccgtcaagaatctgccgtacaaaggagga
aacactctcacaggccttgctctgacttatatcatggagaactgtttcaagcccgaatcc
ggctcacggcctggtgtacccaaaattgggatcctcatcacggacgggaagtcccaggat
gatgtcataccacctgcagagagcctgcaaaacgccggtgttgagctgtttgctatcggt
gttaagaatgctgatgagaacgagttacactccatcgcctcagagccagacaacacgcat
gtgtacaatgtggctgacttcaacatcatgagctccatagtggagggactgaccagaaca
gtgtgcgaacaagtggagcagcaagacaaagacatcaagcagaaacagacaccagagacg
acgggagcaccacttgacctggttacatcagaggtgacggcccgaagctttcgggtttca
tggagccacgcccccggaaatgtagaaaaatacagagtggtttattatccttctcaggga
ggagaaccacaggaggtggtagtggagggcggtgagacttcagcggtgttagagcatctc
agctctctcacagaataccaggtggctgtgtttgctgtgtacgcaaacgatgcaagtgaa
gctctgagaggatcagaaacaaccctggctcttcccacagtaacgggcctccagctgtat
gatgtgactcaaagcaccatgaaagcgagatgggacagtgtggatggagtctccggctac
atgctgctgtatgcacctcttaaagaaagtggagacttggatgagaaggagatcaagtta
tcggatgcagtgacagagatagagctgggtgcgttggtccctcacactgaatacaccgtc
actgtttatgcaatgtatggagaagaagctggtgaccctattacaaaccaggaaacaaca
ttaccattgagtcctcccaccaacctccagttctctgacatcactcacaactccgcccac
atcagctgggacccagcgcccaaaggagttaaaggttaccgcatcatgtgggtgaagaca
gacggactaaccacacaggaggtggaggtgggagttaagaactcctatgacctcagcgat
ttgacgtccctgatggagtatggagtggctatcttcgcccagtatgacgagggcgaatca
gctgcgctcacagacgcgttcactaccactccagtccctggtcctttgaatctgcgttcc
agtgacgtgagcacagacagcttccaggtcagctgggatcactcagccaatgacatcgtc
ctttacagactctcctgggcaccattcacaggtggcgacacaaaagaggtgatgttgagt
ggaactgagaacagatacaacctgatcgctctgagtccatctactgagtatgaagtcatg
ttgacagccatattcaaagatcaatcagagagtgacaccatctccgttatagagaccaca
ttggctgagacaacaacgattgctaccacgactacaatggcgcgacaggctgtgagaaac
cttcagctgagtgacgagaccacccagagtttagaggcatcgtgggagctggaggacccc
catgtggagagctacagggtcacctatgctggcctcaggggcaaccacgaagaagagtct
gtgttacttcctgtcagtcagaggagagcagtccttcaacctttgttatcagacacccag
tacaaagtgacagttacaccggtgtacagtgacggacaagacggcatcagtgtctcagcc
cgtggtgctacattgcctctcttgtctcctggaaacttacgtgtgtcggaagagtggtac
aaccgtttcagggtgacctgggatccacctcagtctcctacaatgggttacaggatcgtc
taccagcccatctacgttccaggaccaattctggagagaacagtgggtgaagatgtgaac
tccatgctcctcttgaatctattaagtgggactgagtacagtgttcaagtgacagcttcg
taccctgcaggtcaaagtgaaccacttctagtgaatgccaagacaatgttcctcggggtc
tctggcttgtcaacctaccaggtgcgatacaatagcatgtgtgtccaatggcagcctctt
ctacaggccacattatacagagtctccatacagtctccactcaatggtcagaagcaggaa
gtgagcctgggaggtggtgcatcccgacagtgtttctatgacctcagtccgagcagccaa
taccagatcagcgtccacacccagatgcaaggaatggagggaccttctgtctccataact
gacatgacgctgccagagcccactcaagctccaactgaagcccccaccacagagccgcct
cccactatcccgcctgccaaagaagtttgtaaggaggccaaggctgacctggcgttcctg
gttgacggttcctggtccatcggcgacgacaacttcatgaagatcacacgtttcctctac
agcaccatgggatcgctggatctgattggaccagatggcacccaggtggccattgctcag
ttcagtgacgacgctcggacagaatttcagctgagttcccatggcaacaaggaagcacta
ctggaagctattcagaagatcagatacaagggcggaaacaccaagacaggtcgggccatc
aaacatgtgaaggagtctattttcactgcagaggctggagccaggaggggtgttcctaag
gtcctggttgttctcactgatggacgttcacaagatgatgttaacaaagtgtccaaggag
atgcagatggatggttatatcatctttgccattggctttgctgatgcagactatggggag
ctggtgaatattgccagtaagcccagcgataggcatgtcttttttgtggacgatttggat
gccgtgaagaaaatagaagaacagctcattacttttgtctgtgaggctgccactgccact
tgtccatctgttttaatgagtggtaacacaatggcaggttttcgtatgatggagaagttt
ggccttgtagagaaggagtatggcaccatacctggagtttctctggagcccggttcattc
aacagcttcccctgttacaggttacaccgtgacgccctggtgtcacagcccaccaggtac
cttcaccctgaagggttaccctctgactacaccatttctatgatgctccgcctacttccc
gagaccccgcaggagccctttgcattgtgggaaatcctcgacaaagacaacgagccattg
gtgggactgatcctggataactctggaaagacattgacgttcttcaacaatgactacaaa
ggagagttccagaccgtcacctttgaaggaaatgaaatcaaaaaaatcttccatggaagc
ttccacaagctccatgtaaccatcagcaagacgactgtgaaggtggtgttagattgttct
gtggttggggagaagtccatcagtgcagctgggaacattaccactgatggggtggagatt
ctcgggaggatggttcggtacagaggcagacgggacaactctgcaccatttcagctccag
atgtttgacatcatctgcagcacatcctgggccagcagagataagtgttgcgagctccct
gcgttgagagttgaggagcagtgcccttccatgcctcacgcctgtacctgctcccaggac
agcaaaggccctccaggaccttctggaccccctggaggcccaggcgtaagaggagccaga
ggagagagaggagagccaggactgacgggaccccaggggccagtaggagagatcggccct
cctggaccatcaggaccgcctggtccacaaggacccagtggtctctctattcaggggccg
ccgggtgctgctggagcgaagggagagagaggagcaaacggtccagctggacaaatgggt
gttcctggaagcacgggctcccctggtagagacggccccccaggaacaaggggtctaccg
ggtaatattggaccacagggacgacaaggacctcctggacccattggaaccccaggagca
ccaggagctccaggatctggcgggtcagcaggggcccaaggagatcaaggacttcctggt
cctgctggtaccaaaggcgataagggagaaagaggtgatgtgcaatcccaagccgctgtg
cgcgcaatcgcacgccaagtgtgtgaacagctcatccaaagccacttgtctcgctataac
tccatactgaaccagattcccgtccagtcgtcagtatcagtccgaacagtgcccggacca
cctggagagccgggcaggagaggctccccaggacctcaaggagagcaagggccatccggc
aggccaggcttccctggtagcaatggccagagcggacggccaggagagagaggtctaccg
ggagagaagggagacagggggagtccaggcattgggactcagggacctcgaggaccacca
ggacctccaggtctgcctggtgaaggacgaacaggcagccagggcccccctggtcggccc
ggtaacccgggaacacaggggaggtcggggaatccaggttccacgggaccagctggccca
ccaggatactgtgaccagaactcctgtctggggtacaacgttggagttcaacaggactat
gggaatgattactga
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integrated database retrieval system
