Larimichthys crocea (large yellow croaker): 104938871
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Entry
104938871 CDS
T04659
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104938871 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lco03019
]
104938871 (patl1)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104938871 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
104938871 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104938871
NCBI-ProteinID:
XP_019131415
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All DBs
Position
X:complement(36999415..37013784)
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AA seq
836 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDEGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERGGL
GGGLGLGGGGMGGESDLGGAGDSSSTRLPSSAVHLHMPSSLPSLKFTSSSSGLPPSDVED
RGGGGDLAESLARFILDADPAIAGVGAAERPGPSPGSSGSSLSVLQGLDRSRVLPQPSSI
PHPTQPHQHPHHPQHQLPPGPSTSGLPPGPPPSSMLSYQQQQHLLRRGTASMGQMNSHSI
WENSMGFGPVSVTPGLVTHMEDSPLMSIIKEVGLPKRPPPGRSDEGQDLSERVPPPRSSS
PVIGSPPVRAVPIGTPPKQPMSHTLNHQIHHPMAVHVRAPVQHRYPPPFPERLSPNTLLN
IANSPLCRGPFPPGVGPVLSQIQRAQLLNSQVAGFPRGGPAPPLLPGGGGFRPFFGGPPP
PHGHRMGPPPPHGPPNHTPPIRHNTTHLHPQHRRMLTQRMQNRGGDRGRTAGDRRSRDPY
SNLMTQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQEREQDSSKKEHTTKLIT
PQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRTDDEEKREKQVWNKRRQIL
YTVEKMYSLLLEVQDFEKRFVQAPEEDREALLEQHKTNTVQLCNSLREKEWDDRVSDEQC
VMIMSVRKGKRLISRLLPLLPSPQAAAVVMAIARNLPALAKKDKQDQVLCWLVEPVSAVI
QSLSSSALTDLLQELQGNEGQLATVLHNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRW
TELVFSVTRELLSVPSSSLSPPLFTPPNLLSLLSRYVDRQRLELLQEKLQISALSR
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtacgctggaggaggaagatgaggggctc
atagaagaggaagatgaaattgatcagttcaacgatgacaccttcggagccggggccatc
gatgacgactggcaggaggaacacaaacgcctcgctgagctcgacgagaggggcgggcta
ggagggggactggggttaggaggagggggcatgggaggagaatctgatttaggaggagct
ggggactcctcctccacccgtctcccgtcctctgcggtccatctccacatgccatcatcc
ctcccttcactcaaattcacctcgtcttcctctggactgcctccatcagatgtggaggat
cgaggagggggaggcgatctggcagagtctctggccagattcatcctggatgccgaccca
gccatcgctggggtcggtgcggctgagaggcccggtccgtcccccggctcttcaggatcc
agtctgtctgttcttcaggggctggacagatccagagtcctgccccagccctcctccatc
ccacatcccactcaaccacaccagcatccccatcacccccagcaccagctgcctccgggg
ccctccacctctggccttcctcctggccctcccccctcatccatgctcagctatcaacag
cagcagcacttgctgcgcagagggactgcttctatgggccagatgaactctcacagtatc
tgggagaacagtatgggctttgggccggtcagcgtcacccccggactcgttacacacatg
gaggatagtccactaatgtctataatcaaggaggtgggtcttcctaagcgaccacctccg
ggtaggagtgatgaaggacaggatttgtcagagagggtcccacctccacgctcttcctcc
cctgtgattggatcccctccggtgagggcagtgcctattgggaccccacccaaacagcca
atgagccacaccctgaatcatcagatccaccatcccatggcggttcatgtcagagcccca
gtccagcacagataccctcctcccttccctgagcgtctgtcaccaaacaccctcctcaat
atagctaactcccctctgtgtcgtggtccattccctcctggagtcggtccagtcctgtct
cagattcaacgggcccagctgctcaactctcaggtggctggttttccccgcggtggcccg
gcgcctccattattaccaggcggtggtggtttcaggccgttcttcgggggtcctcctcct
ccacacggtcaccgaatgggcccgccgccccctcacggtccccctaaccacacaccaccc
atccgacacaacaccacccacctgcacccccagcaccgtcgcatgctcacccagcgcatg
cagaaccgaggaggggatcgtggcaggactgcaggggaccgacgcagcagagacccctac
agtaacctgatgacccagaaagagaaggaatgggtaaccaaaatccagatgatgcagttg
caaagtactgacccttatctggatgactactactatcagaactactacgaaaagatggag
aaacgtcaggaaagagagcaggacagcagcaagaaagaacacaccacaaaactgatcact
ccacaggtcgccaaggttgaacacacctacagaccagttcagtttgcaggttctctgggt
aagctgaccgtgtccagcgtcaacaatccccgcaagatgattgatgccgtggtgacatct
cgcacagatgacgaggagaaaagagagaagcaggtttggaataagaggcgacagatcctc
tacaccgtggagaagatgtatagtttgctgctggaggttcaagactttgagaagcgtttt
gtccaggcgccagaggaggaccgtgaggctctgctggagcagcacaaaaccaacaccgtg
cagctgtgcaactctctgcgggagaaggagtgggacgacagagttagtgatgagcagtgt
gtgatgatcatgtctgtaaggaagggaaagcgcctcatctccaggctcctccccctcctg
ccatcgccccaggccgccgccgttgtcatggcgattgcccgcaaccttcccgccctggcc
aagaaggacaagcaggaccaggtgctgtgctggttagtggagccggtttctgcagtgatc
cagtcattgtcgagctccgccctcacagacctgctccaggagcttcagggcaacgagggc
caactggccacagtactgcacaacaagtttggtgtgacactgctgtatctgatcctgagt
gaaggagaaaggatgcaaagctccgaccctaactgtcaactcatggacgacaatcgatgg
actgaactggtgttttcagtgacgagggagttgctcagcgttccctcctcatcgctctct
ccacccctcttcacccctcccaacctgctctccctcctgtcacgctatgtcgatcggcag
aggttggagctgttgcaggagaagctacagatctctgctctgtccaggtag
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