Larimichthys crocea (large yellow croaker): 104939308
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Entry
104939308 CDS
T04659
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104939308 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104939308 (smarcc1)
03036 Chromosome and associated proteins [BR:
lco03036
]
104939308 (smarcc1)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104939308 (smarcc1)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104939308 (smarcc1)
PBAF complex
104939308 (smarcc1)
GBAF(ncBAF) complex
104939308 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
Chromo
BRCT_2
DUF919
Motif
Other DBs
NCBI-GeneID:
104939308
NCBI-ProteinID:
XP_027143075
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All DBs
Position
XIII:complement(37187794..37206574)
Genome browser
AA seq
1151 aa
AA seq
DB search
MLWIWHGGERDAADTNTHNGDGGGDHGRGGRAAEGGLRRTATGGPAGSGTAVGRKKDGGP
STKFWESSETISQLETVRLWVGKHYKKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNN
PALTKLPAKCFLDFKAGGALCHILGSVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKN
LVQNNCLTRPTVFLSPDIEQKQASKLKDIIKRHQGSITDDKSKATHHIYPSLSQQEEEEW
LRPVMRKDKQVLVHWGLSPDSYDTWVSASEVDGDVEEPPSTDRPWKVHAKWVMDTDAFNE
WMNEEDYEVDENKKPVSFRQRIFPKEEESSRTPDRKERKANSAGKKRRRSPSPPSTPAES
RKKGGKKGNPGPHWKRRGHRGEEEDTEEDMTKDMDDSSAGASMEEGSMSKNANSKKDSEN
TPVKGGNMADLDDMEDDSVLSGGKDDEEQGKAEINRLIDAGEDNVTEQTHHIIIPSYSAW
FDYNCIHEIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTG
DVCAIMRVHAFLEQWGLVNYQVDADSRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIP
PPQQMPNFADKGKDKAIDLQNFGLRTDLYNKKNPKGKAVTITREWTEQETLLLLEALEMF
KDDWNKVSEHIGSRTQDECILHFLRLPIEDPYLESTEASLGPLAYQPIPFSQSGNPVMST
VAFLASVVDPRVASAAARAALEEFSRVREEVPAELVEAHVKKVQEAARSTGKVDPAFGLE
SSGIAGTAPEEPEKTESTEAEKMDTDSDSQQADKAELKDEAEKPSESAEKSGDKTEAADK
VKKEGAEASEREEENEEGGEAKTAPADKDKDEAMETSSSEQDKDKEEKAASEEGAEDKRK
KLEHDIEEGNIATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFE
ELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQQMEQQAAAAAAAAAAHAQG
HGQAPGSGPHPPGMHPGGPQPHHGAPVPHHGGPPPGGAMHPGYPPMGHHPMAPHHPGQTG
PMGPGQPMPGRMMPGPPSAGPPPGGMPPMMPPRHPGAPNGMYPGPPPAQPEAVPAVPVGP
PAPPTARVADN
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgttgtggatctggcacggaggagaaagagacgcagcggacacaaacacacacaatggc
gacggcggcggcgaccacggcagaggagggcgggcggcggagggcgggctcaggcggacg
gctaccggcggcccggccggcagcggtaccgcggtgggacgaaagaaggacggcggtccg
tccacgaagttctgggagagttctgagacgatatcgcagctggagacggttcggctgtgg
gtcgggaagcactacaagaagtatgtccaaaatgactctccctccagtaaatccttggct
ggtctggtggtccagctgctgcagttccaggaggacgcgttcggacgcagagtcaacaac
ccggctctcactaagttacccgccaagtgtttcctggatttcaaggcgggaggtgctctc
tgtcacatcctgggctcggtctacaagtttaagagcgagcaggggtggcgcagattcgac
ctgcagaatccatcccggatggacaggaacgtggaaatgttcttaaacgtggagaagaac
ttggtccagaataactgcctgactcgaccgactgtcttcctgtcgccggacattgagcag
aaacaagccagcaagctcaaagacatcatcaaaagacaccagggctccatcactgacgac
aagtcgaaggccacccaccacatttacccctctctatcccaacaggaagaagaagagtgg
cttcgtccggtcatgaggaaggacaagcaggtgttggtgcactggggtctctccccggac
agctatgatacctgggtatcagccagcgaggtggatggggacgtggaggaaccaccgagc
actgacagaccatggaaggtccacgccaagtgggttatggacaccgacgccttcaacgag
tggatgaacgaagaagactacgaggtggacgagaacaagaagccggtcagcttccgccag
aggattttccccaaagaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggcc
aactccgccggcaagaagaggaggcgctcgccctcgccgcccagcactcccgccgaatcc
cgcaagaagggaggaaagaaggggaacccggggcctcactggaagcgacggggccacaga
ggcgaagaggaggacacggaggaggacatgaccaaggacatggacgactcctcagctgga
gccagcatggaggagggcagcatgtccaagaatgcaaattcaaagaaagacagtgagaat
actccggtcaaaggagggaatatggccgacttagatgacatggaggacgactctgtgctg
tctggaggaaaggacgacgaggaacagggcaaagccgagatcaaccgactgatcgacgcc
ggcgaggacaacgtgactgaacagactcaccacatcatcatccccagctacagcgcttgg
ttcgactacaactgcatccatgagatcgagagaagagctctgcccgaattctttaacggg
aagaacaagtccaaaactcctgagatctacctggcctaccgcaacttcatgatcgacaca
taccggctgaaccctcaggagtacctcacctccacttcctgtcgcaggaacttgaccggg
gacgtctgtgccatcatgagggttcacgccttcttggagcagtggggtttggtgaactac
caggtcgacgccgacagtcgcccgttgcccatgggccccccacccacgcctcacttcacc
gtgctggctgacacaccgtccggcctcatgcccctgaaccacagacccccaccgatcccc
cctccacagcaaatgcccaacttcgcagacaaaggcaaagacaaggccatcgacctgcag
aacttcggccttcgcaccgacctctacaacaagaaaaaccccaagggtaaagctgtcacc
atcaccagggaatggaccgagcaggagacgctcctgctgctggaggctctggagatgttc
aaggacgactggaacaaagtgtccgagcacatcggttcacgcacccaggacgagtgtatc
ctgcacttcctgcggctgcccatcgaggatccgtacctggagagcactgaagcctccctg
ggccctctggcctaccagccaatccccttcagccagtccggaaaccccgtcatgagcaca
gtcgccttcctggcctctgtggtcgatcccagagtggcatctgccgccgccagggcagct
ctagaggagttctcccgtgtgcgcgaggaggtgccggcagagttggtggaggctcacgtg
aaaaaggttcaggaggcagcccgcagcacggggaaggtggaccccgccttcggcctggag
agcagcggcatcgctggcaccgcccccgaggagccagaaaagaccgaaagcacagaggca
gagaagatggacacggactccgactcccagcaggccgataaggcggagctgaaggacgag
gctgagaaacccagcgagtctgcagagaagagcggcgacaagacggaggccgccgacaag
gtgaagaaggagggagcggaggcatcggagcgcgaggaggagaacgaagagggaggggag
gccaagacggctccagcagacaaagacaaagacgaagccatggagacgtcgtcctcggag
caggacaaagacaaagaggagaaggcggcctcggaggagggagcggaggacaagaggaag
aaactggagcacgacatcgaagaggggaacatcgccaccgcggccgccgccgctctggca
tctgctgccaccaaggccaagcacttggcagctgtggaggagaggaagatcaagtccctg
gtggctctgctggtggagacccagatgaagaagctggagatcaagctgaggcacttcgag
gaactcgagaccatcatggaccgagagaaagaggccttggagcttcagcggcagcagctt
ctcaccgagcgccaggcgttccacatggagcagctcaaatacgcagagatgaaggcgcgg
cagcagatggagcagcaagccgccgctgcagcggcagccgccgccgcccacgctcaaggc
cacggccaggctccgggatctggaccccatccaccgggcatgcaccccggagggccgcag
cctcaccacggagcaccggtgccccaccacggagggcctccacccggaggtgccatgcac
cccggataccctccgatgggtcaccaccccatggccccgcaccacccaggacagacagga
ccgatgggaccgggtcagccgatgcccgggcgtatgatgcccggcccgccctccgctggg
ccccctcccggcggcatgcctcccatgatgcccccacgccaccctggcgctcccaacggc
atgtaccccggcccgccacccgcacagcctgaagcggtacctgcagttcctgtgggtcca
ccagcgccaccgactgctcgagtggctgacaactaa
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