Larimichthys crocea (large yellow croaker): 104939324
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Entry
104939324 CDS
T04659
Name
(RefSeq) neurofascin
KO
K06757
neurofascin
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04514
Cell adhesion molecule (CAM) interaction
lco04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
104939324
04517 IgSF CAM signaling
104939324
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
104939324
Cell adhesion molecules [BR:
lco04515
]
Immunoglobulin superfamily
L1 family
104939324
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Bravo_FIGEY
V-set
Ig_VEGFR-1-like_5th
FN3_DSCAM-DSCAML_C
C2-set_2
Fn3_ROS1
Ig_6
Pur_ac_phosph_N
Ig_PDGFR_d4
Adeno_E3_CR1
BiPBP_C
DUF6724
Motif
Other DBs
NCBI-GeneID:
104939324
NCBI-ProteinID:
XP_019112751
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All DBs
Position
XV:8557997..8574383
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AA seq
1179 aa
AA seq
DB search
MGTLVEPALLLLLWQSVWALDIPLEVRQPPTIIKQSVKDHIVDPKDTMVIECEAKGNPHP
IFSWRRNGKYFNVARDSQASMRRRSGTLDIYAKNNPEQYEAEYQCIASNEYGSAYSNKIR
LRLYRAPVWPREILEPVVISAGLPLVLSCDPPPGPPKPETYWMSSCSYARPFNWPIQTAF
PTMQPVRQDRRVSMGVNGDLYFSNVLFNDSATDYCCNARFPYKNVIQQKMPVVVKVLTTR
TVAEAAPSWLSPTGSSSSILVLQGEELLLECIAAGVPTPHISWTKDGDDLVVRPRMRVKN
FNKMIQIPRASFDDAGEYVCSATNKIGYIEHTITVRVKAAPFWLEKPADLVLAPEENGRL
VCRSDGVPRPTISWFLNGEPIETATPLPNRQVSGDTLTLRSVTIENNGVYQCNASNPFGY
LLANAFVNVLHATPRILGPRNELNKVTEGTNVFLHCRFFGSPVPELRWSKYGQGNLEGNR
FKTYSNGTLEIKRIRIEDQGTYLCIVSNVAGRDESQVRIEVKEPTLIVTKPQSLKVIRGT
DVRFECGVKADVTTPVTTTWLKGKKPVTLGWRITMDESNLVITNVNRDDEGNYTCVIKSE
LDQKSASARLLVMDRPDPPTNLELSDPYERSVRLSWAPGDNNHNPISEYLVQYDDDDWLP
GKWKNLSTYAGNLNSVILHLTPFTYYEFRVIAINEIGMSRPSRPSKRFQSSGAPPDVIPK
NLKGVGTWRNNMEISWEPLTYREWNGPHLKYLVWWRRRDSREEWKNATTKWLKYYIYDAD
TFTPYEIKVQAVNDFGLGPESPVVTGYSGEDRPLSAPLNLRVSDIESTQATLHWDTVERG
SIMGELKEYKIYYWRDSSQLRWHRVNRGMKSKTFPNDDPEPSGVLTGLIPYSNYKMYIVV
ANNRYEGPPSNNIHFSTPEGVPSVPKSFRIQQRHLDSIYVDWDLPAEPNGIITGYSLKYQ
TVNATRGEELRVEEFLPNVTSFSVRRYDRYTRYRFSVAARTRIGIGEWHTEESPHYTTEI
YAQDQVDISTQGWFIGIMCAVALIVLILLIVCFIKRSRGGKYPVREKKDISLEPVDDKDQ
EGSFDYRSLERIARVSTLPYPRREEERGLQRGQPSMEAMMKRSDSDDSLVDYGEGGEIPF
NEDGSFIGQYTGTRRDVRDLDFGGSLELHSPMNTIYSLA
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggggacactggtcgaaccagcgctgctgctacttttatggcagagtgtttgggctttg
gacatccctctggaagtcaggcagcccccaaccatcataaaacagtcagtaaaagaccat
attgttgaccccaaagacaccatggtcattgaatgtgaagccaaaggaaaccctcatccc
attttctcatggaggcgtaatgggaagtatttcaacgtggcacgtgactctcaagcatcg
atgcgcaggcgctcagggacactggacatctatgccaagaacaatccagaacaatatgag
gcagagtatcagtgcatcgcctccaatgagtatggatctgcatactccaacaagatcaga
ctacgactatacagagcgcctgtgtggccgagggagattctggagcctgtggtgatcagc
gctggcctgcctctagtcctgtcctgtgaccctccacctggcccacctaaacctgaaacc
tactggatgtccagctgctcatatgcgagaccgttcaactggcccattcagacagctttc
cccaccatgcagcctgtgcggcaggaccgcagggtatccatgggagtaaatggagatctg
tacttctctaacgtcctgttcaatgactctgcgactgactactgttgtaacgcccgtttc
ccctacaaaaatgtcatccagcagaagatgcctgtggttgttaaagtgcttacaactcgc
acagtggccgaggctgcccccagctggctgtctcccacagggtcgtccagctccatactg
gtcctgcaaggggaagaactgctcttggagtgcattgctgcaggagtgccaactcctcat
atcagctggaccaaagatggcgacgacctggtggtgaggccacgcatgagagtaaagaac
ttcaacaagatgattcaaatcccgagagcatcttttgatgacgcgggtgaatacgtctgc
agtgctaccaataaaattggatacattgagcacacgataactgtcagggtcaaagcggct
ccattctggttggagaagcctgctgatctagttttggcccctgaggaaaatggacgcttg
gtatgtcgttctgatggtgttcctcgtcccacaatcagctggttcctcaacggggaacca
attgaaactgccactccgctgcctaacagacaggtgtcaggagacacgttgactttacgc
agtgtgaccattgaaaacaatggcgtctatcagtgcaacgcttccaatccatttgggtac
ttattggccaatgcttttgtcaacgtgctgcatgcaactccacgcattctcggacccagg
aatgaacttaataaggtgacggagggcactaatgttttccttcactgccgcttctttgga
tccccagtgcctgaattgcgatggtccaaatatggacaggggaatcttgaaggaaatcgt
tttaagacctacagtaacgggactctggaaataaaacgcatacggatagaggaccaggga
acgtacctgtgcatagtcagcaacgtcgcaggaagagatgagagtcaagttcgaatagag
gtcaaagagccgactttaatcgtcacaaaaccgcaaagtttgaaagtcatccgtggaacc
gatgtgcgcttcgagtgtggcgtaaaagcagatgttacaactcctgtcacgaccacctgg
ctgaaaggcaaaaagcctgtcactcttggctggagaatcaccatggatgaatcaaatttg
gtcatcactaatgtaaacagagacgatgagggcaattatacttgtgtcatcaagagtgaa
ctggaccagaagtctgcctcagcacgcctattagtgatggaccgtcctgatcctcccact
aacttggagttgtcagatccatatgaacgtagtgtgagactcagttgggcccctggagac
aacaaccacaacccgatttcagagtacctagtgcagtatgatgatgacgactggttgcct
gggaagtggaaaaacctgtcaacgtacgcagggaacctcaactctgtcatcctgcatctt
acacctttcacctactacgagttccgggtcatcgctatcaacgaaattgggatgagtcgt
cctagtcgtccatctaaacgcttccagagcagcggtgcacccccagatgtcatcccaaag
aacttaaagggtgtgggcacatggaggaataacatggagatcagctgggagcctctaacc
tacagagagtggaacgggccccacctgaagtatttggtgtggtggaggaggagagattcc
cgagaggagtggaagaacgcaaccacaaaatggttgaaatactacatctacgatgcagat
accttcactccttatgagatcaaagtccaggctgtcaacgactttgggctgggtccagaa
tctcctgttgtcactggttactctggggaagaccgtcccttatctgcacctctgaacctg
agagtgtccgacatcgagagcacccaggcgaccttacactgggacacggtggagcgcggc
tctattatgggagaactgaaagaatacaagatttattactggagggacagcagccagctg
aggtggcatagggtcaaccgagggatgaagtctaaaacatttccaaacgatgatccagag
ccctctggggtgctcactggactcatcccctatagcaactacaagatgtatatagtggtg
gcaaacaatcgatacgaaggcccgcctagtaataatatacacttctcaacacctgaagga
gtgccatccgtgcccaaatccttcaggatccaacagcgacatctggacagtatatacgtc
gactgggacctgccagcagaacccaacggtatcattacgggatattccctcaagtatcag
acagtgaatgccaccaggggagaggagctgcgagttgaggagttccttcctaatgtaaca
agtttctcagtccgacgatacgaccgctacactcgatacagattctctgtggcggcacga
actcggatagggataggggaatggcatacggaggagtcaccccactacaccactgaaatt
tatgcccaggaccaggtggacatctccactcagggctggttcatcgggattatgtgtgct
gtggctctcatcgtgctcatcctactcatagtctgcttcatcaagaggagtcgagggggg
aaatacccagtccgggagaaaaaagacatttcattggagccggtggatgacaaagatcag
gaggggtcatttgactaccggtctcttgaaaggatagcacgagtctccactctgccttac
ccacggcgagaggaggaaagagggcttcaaagaggccaaccatctatggaggcaatgatg
aagcgatcagacagtgacgacagtctggtggactatggtgagggaggtgagataccgttc
aacgaggacggctcgttcatcggccagtacacaggaaccaggagagatgtcagggatttg
gactttggtggaagtctggagctccattctccgatgaataccatctactccctggcataa
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