Larimichthys crocea (large yellow croaker): 104939737
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Entry
104939737 CDS
T04659
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lco03016
]
104939737 (trub1)
Enzymes [BR:
lco01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
104939737 (trub1)
Transfer RNA biogenesis [BR:
lco03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
104939737 (trub1)
Prokaryotic type
104939737 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
GAIN_A
Motif
Other DBs
NCBI-GeneID:
104939737
NCBI-ProteinID:
XP_019126914
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Position
XVI:726340..744400
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AA seq
276 aa
AA seq
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MAGSITNPPISSSLAKLQSLNGLFAIYKKQGPTSADVLNTLKEALLKEAGVQNPNPRKRK
KQSLKMGHGGTLDSAASGVLVVGVGNGTKMLSTMLAGSKKYVAVGELGKATDTLDATGSV
TVEKDFEHITRLDFEDKLKTFTGDIMQVPPLYSALKKDGQRLSVLLKKGHKVEAKPARPV
TVYNLSLQEFKPPLFTLDIECGGGFYVRSLVDDVGKALSSCAHVKELIRTKQGQFTLEEH
ALHEEQWTLEHILRSLQPCSGSEQTMDCTKAAEADT
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaagtataacgaaccctccgatcagcagctctctggccaaactgcagtctctg
aacggactgttcgcgatctataaaaagcaaggaccgacctctgcagacgtgctgaacacg
ctcaaagaagctctgctcaaagaggctggcgttcagaacccgaacccgcgaaaaaggaag
aagcagagcctgaagatgggacacggagggacgctggacagcgctgccagcggggtgctg
gttgttggtgttggcaatggcacaaagatgctcagcaccatgttggctggttctaagaaa
tatgtcgctgtgggagaactggggaaagcaacagatactctggatgccactggcagtgtg
actgtggagaaagactttgaacacatcaccagactggactttgaggacaagctgaaaaca
ttcactggtgacatcatgcaggttcctccactctactctgcactgaagaaagatggccag
cgtctgtctgtgctgctgaagaaaggtcacaaggttgaggccaaaccagcgagaccagtc
accgtgtacaacctgagcctgcaagagttcaaaccacctctcttcactctggatattgag
tgtggtggtggattttatgtccggagcttggtggatgacgtgggaaaagctctgtcatcg
tgtgcccacgtgaaggagctgattcggaccaagcagggtcagttcaccctggaggagcac
gccctacatgaggagcagtggaccctggagcacatcctgcgctctctgcagccctgctca
ggctcagagcagaccatggactgcacaaaggcagcagaggctgacacctga
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