Larimichthys crocea (large yellow croaker): 104939755
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Entry
104939755 CDS
T04659
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03008
Ribosome biogenesis in eukaryotes
lco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104939755 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
104939755 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104939755 (xrn2)
03019 Messenger RNA biogenesis [BR:
lco03019
]
104939755 (xrn2)
03009 Ribosome biogenesis [BR:
lco03009
]
104939755 (xrn2)
03016 Transfer RNA biogenesis [BR:
lco03016
]
104939755 (xrn2)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104939755 (xrn2)
Messenger RNA biogenesis [BR:
lco03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104939755 (xrn2)
Ribosome biogenesis [BR:
lco03009
]
Eukaryotic type
Pre-60S particles
RNases
104939755 (xrn2)
Transfer RNA biogenesis [BR:
lco03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104939755 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
104939755
NCBI-ProteinID:
XP_019121303
LinkDB
All DBs
Position
XI:complement(1316701..1341531)
Genome browser
AA seq
985 aa
AA seq
DB search
MGVPAFFRWLSRKYSSIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKNRMREEVIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAQCLRYYVAD
RLSNDPGWRNVVVFLSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQIGHEIKDCQGVAREKQGQHDEFADSMPASEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTENGYVNLERVEMIMQAVGVAEDNIFKKRKEDDESFKRRMKE
KRKRAKQAERGPAYMTTGQFAPQALGRRDRPEAVQNARHQAFDMRMQSREQHNKDAAQSL
KATMRNGGNSSAGPSDSSDSRGVKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDV
TDEDFRRKVVRSYVEGLCWVLRYYYQGCVSWKWYFPFHYAPFASDFKDIKGLFTEFEKGT
KPFKPLEQLMGVFPAASGNFLPETWRSLMMSPDSSIIDFYPDDFAIDLNGKKYAWQGVAL
LPFVDERRLRAALADVYPDLTPEEVRRNSLGSDLLFLGKSHPLFDFIHELYRAESLEGTE
IPAELCHGIQGTLNLDDDPILPDKAVTSPIPMLRDISQNSAIGVKYKDPHYAEDFVFKAV
LLSGAKMPNKVLKPGDWERGNREPWRPQLGFNPNRQQAHLDQSGFRALGHNLNRNQHGRG
QYSNAPPPGNYQQGYRPQHGGGHQPFQHSRQNSLLGAPPPFQQPQYPRQQQQQYGGGGGG
GGGGHGWDRASQSQQSAYQQNAVRGQGGAGSSSYQQRYDQRRDGWHERRDDHRDDRRDNR
GQHHQSYSSSRSYPPPPPSRRYTWK
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgctggctcagccgcaaatattcgtcgataatcgttcac
tgtgtggaggagaagggtaaagagtgtaacggggtccgtattcctgtcgacaccaccaag
ccgaaccccaacgaggtggagttcgacaacctgtacctggacatgaacgggatcatccac
ccgtgcacacatccagaagacaaacccgctcctaaaaacgaagatgagatgatggtcgcc
attttcgagtacatcgaccgcctgttcaacatcgtgcgacccaggagagttctctacatg
gccatcgacggagtggctcctcgggccaaaatgaaccagcagcgctctcggcggtttcgg
gcctccaaagaaggagtggagctggtggaggagaagaatcgcatgagggaggaggtcatc
cagagaggcggttatcttccacccgaggagatcaaagagaggtttgacagcaactgcatc
actccaggaacagagtttatggacaacctggctcagtgtcttcgatactacgtcgcggac
agactcagcaatgaccccggatggaggaatgtcgtagtcttcctgtctgatgccagcgtg
ccgggtgaaggtgaacacaagatcatggactacatcaggagacagagagctcaacccaac
cacgatccgaacacacaccactgcctgtgtggcgctgacgctgacctcatcatgctcggc
ctggccacccacgagccgaacttcaccatcatccgagaagagttcaaacccaacaaaccc
cgcccgtgcgccctctgcggacagatcggtcacgaaatcaaagactgtcagggcgtcgcc
agagagaagcagggacagcacgatgagtttgcggactcaatgccagcgtctgagcaggag
ttcatatttatccggctctgcgtgctgcgggagtatctggccagagagctgaccatggcc
agcctgccgtttcccttcgacttcgagaggagcgtagacgactgggtcttcatgtgtttc
tttgttggaaatgatttccttccacatctgccgtcgttagaaatcagggagggagccata
gatcgcctggtcaacatctacaaagacgtcgtgcacaagactggaggttacctgacggag
aatggctacgtcaacctggagcgggtggagatgatcatgcaggcggtcggcgtggctgaa
gacaacatcttcaagaaacgcaaagaagacgacgagagttttaagagacggatgaaagaa
aaacgaaagagggcgaagcaggcggagcgaggtccagcctacatgaccacgggccagttt
gcccctcaggctctggggagaagagaccgaccggaggccgtccagaacgctcggcaccag
gccttcgacatgaggatgcagtccagggagcaacacaacaaggatgccgctcagtctctg
aaggccacgatgaggaacggaggaaactcgtctgcagggcccagcgacagctcagacagc
cgcggggtgaagaggaaagccgaggacagcgacagcgagccggagcctgaagacaacgtc
aggttgtgggaggacggctggaagcagagatactacaagaccaagtttgacgtggacgtg
acggacgaggacttcaggcggaaggtggtccggtcgtacgtcgaaggtctctgctgggtg
ctgcgctactattaccagggctgcgtctcctggaaatggtacttcccgttccactacgcc
ccgttcgcctccgacttcaaagacattaaaggattgttcacagagttcgagaaggggacc
aaaccgttcaaaccactggagcagctgatgggagtgtttcctgccgccagtggcaacttc
ctgccggagacgtggcgaagcctcatgatgagtccggattcttccatcatcgacttctac
cccgacgacttcgccatcgatctcaacggcaagaaatacgcctggcagggcgtggccttg
ttaccttttgtggatgaacgtcggctgagggcggcgctggctgacgtctatcccgacctc
acacctgaggaagtgagaagaaacagcctggggagcgacttgctgtttctcgggaagtct
cacccgctcttcgacttcatccacgaactctaccgagcagaatctctcgagggcactgag
atccctgcagagctgtgccatggaatccaaggtacattaaatcttgatgacgaccctatt
ctaccagataaggcggtgacgtcgcccatcccgatgctgcgagacatttcacagaacagc
gccatcggggtgaagtacaaggatccgcactatgcagaagactttgtgttcaaggcagtt
ctcctgtctggagccaagatgcccaataaagtcctgaagccgggtgactgggagcgaggg
aacagggaaccatggagacctcagctgggcttcaacccaaacaggcagcaggctcacctg
gaccagtccggcttcagagctctaggtcacaatctgaacagaaaccaacacggcagagga
cagtacagcaacgctccgccacccggcaactaccaacaaggataccgtcctcaacacggc
gggggccaccagcctttccaacattccaggcagaacagtttgctgggagcgcctcccccc
ttccagcagcctcaatatccaaggcagcagcagcagcagtacggaggcggaggaggagga
ggaggaggaggtcacggctgggatcgggcctcgcagtcgcagcagtcggcgtaccagcag
aacgcggtccgcggtcagggaggggccggttccagcagctaccagcagcgctacgatcag
cgccgagacggctggcacgagcgccgggacgatcacagagacgatcgcagggacaaccga
gggcagcatcatcagagctacagctccagcaggagttaccctccacctcctccatccaga
cgctacacctggaaataa
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