Larimichthys crocea (large yellow croaker): 104939933
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Entry
104939933 CDS
T04659
Symbol
usp43
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 43
KO
K11856
ubiquitin carboxyl-terminal hydrolase 43 [EC:
3.4.19.12
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lco01002
]
104939933 (usp43)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
104939933 (usp43)
Enzymes [BR:
lco01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
104939933 (usp43)
Peptidases and inhibitors [BR:
lco01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
104939933 (usp43)
Ubiquitin system [BR:
lco04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
104939933 (usp43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
Motif
Other DBs
NCBI-GeneID:
104939933
NCBI-ProteinID:
XP_027139175
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Position
X:7751544..7825451
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AA seq
1231 aa
AA seq
DB search
MDPRKDSKVRKHMKPKATKRKEKTHRAGRFSRRRSLRSIGNFMGRILKTLGTLAHFGDAD
PPDAEDDDGGFGQSASGAFNDEGTVKKSSTVSSSHGSVKDRLSWCYGDKTPGVLGLKNHG
NTCFMNAVVQCLSNTDLLAEYLGLEQYKSELSHGRVNGEVRGAEERQRSDRGEVRGAEER
QRSDRGEVTEQLAALVRALWTLEYTPQLSVEFKSIVAKYGSQFRGNSQHDALEFLLWLLD
RVHEDANASPNNNNSSSSSSSKTKANAKGHASLEETSSPSSANPQQPRDRHSFVQEHFQA
QYRSSLTCPHCLKQSNTFDPFLCISLPIPLRQTRSMCVTLVFSTKGQRYLRVGLAVPLFG
SLSCLRAMVAEEGNISPDQVILVELYSTGFQRSFSDEDDLTAIADSDVVYAFQAPLLHSR
GGSNAPHSGYYHSLPSSPYTSTAGPGGQRLPPSGTLSSEYLNQGGSTKVLLLICNTAGSG
QQAVRFGPPFLMREDRSISWDQLQQSILSKLCYLMLNGSQAQNAGLLFKIRVVGGSAAYS
YLSPQDSRPLYHPAVDRALKFCGAGGPPHVKLVIEWEHKTKECLFGSIQEEVVKDAESVR
NQQQQHLQQHSCTLDECFQLYTKEEQLAPDDAWKCPHCKQLQQGMVKMSLWTLPDILILH
LKRFRQVGERRNKLSTLVRFPLTGLDMAPHVVKRSQSMRNLNLGGWKQHHQPADMILPHD
YLYDLYAVCNHHGGMHGGHYTAYCRNSVDGQWYSYDDSSVDLVPEEEVCTRGAYILFYQR
RNTIPPWSASCSVRGSTSSSMSDHWLIRLTGDSKRGSLVSRSSTTCPSSIPDSPESPVFL
SNDSKEERGGFDSRPFIRGLQGRSVSMRTPSKTKDTLSKVFPLRWSLGSKDRRKPDPVPP
PVQDPAPVELVQYLESGRRPRCTKDPIVTLMSESRNTKETAEGQSATNVRSSSVGSISCV
GKMGYESPQVPEGQRRPSLKTASLRRSKGSQTREESTANISSSSSSNTLTRRKEARKQSS
SKASQDTETKRSSSTGVQPSYSTPSLHDGTLRRQKGDRTDREHHGTHEGNSKTKKAEVPK
SHEGLFSFFKGNFLKKDKDSRKSREGASVKEGAEEGSRRTLSRLSLSNGAAGGAGVEGGR
SNGSSHLGDELANGKVGRSAADIKRSQSSSNIPTKAEQSMRRTASLHRNGMSTAPASRSL
ATDKPSYGTLQRTRYSTTSLGRKKTVPESSF
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggatccgcgcaaggacagcaaggtaagaaaacacatgaagcccaaagccacgaagcgg
aaagagaagacgcacagagcggggaggttcagcaggaggaggtcgctgcgatcgatcggg
aatttcatgggaaggatcctgaaaactttgggcactttggcgcacttcggcgacgcggat
ccgccggacgcggaggacgacgacggcggcttcgggcagagcgcgtcgggggcgtttaac
gacgagggcaccgtgaagaagagctccacggtgtcctcctctcacggctcggtgaaggac
aggctgtcgtggtgctacggcgataagacccccggggtgctcgggctgaagaaccacggc
aacacctgcttcatgaacgccgtggtccagtgcctcagcaacacggacctgctggccgag
tacctcgggctggagcagtacaagtcggagctgagccacgggagggtgaacggggaggtg
agaggagcagaggagcggcagaggagcgacaggggggaggtgagaggagcagaggagcgg
cagaggagcgacaggggggaggtgaccgagcagctggcggcgctggttcgagcgctgtgg
acgctggagtacacgccgcagctgtccgtggagttcaagagcatcgtggccaagtacggc
tctcagtttcggggaaactctcagcacgatgccctcgagttcctcctctggctcctggac
agagtccatgaagacgctaatgcgagccccaacaacaacaacagcagcagcagcagcagc
agcaagaccaaagccaacgccaagggacacgcttcattggaggaaacctccagtcccagt
tcagccaatcctcagcagcctcgagatcgacacagtttcgtgcaggagcatttccaggct
cagtacaggtcttctctgacgtgccctcattgccttaagcagagcaacaccttcgacccg
ttcttgtgcatctcgctgccgatcccgctgcgacagaccaggtcgatgtgcgtgacgctg
gtgttcagtacgaagggtcagcggtacctgcgggtcgggctggctgttcctctctttggt
tccctgtcctgtctgagagccatggtggccgaggagggcaacatctccccggaccaggtc
atcctggtggagttgtactcgacgggtttccagcgttccttctcagacgaggacgacctg
acggcgatcgctgacagcgacgtcgtctacgccttccaggctcctctcctccacagtcgt
ggaggctccaacgcaccgcactcagggtattatcacagcctcccctcgtcgccctacacc
tccacagctggacccggcggtcagaggttacctccgtccggcacgctgtcctctgagtac
ctgaaccagggcggctccacaaaggtcctcctcctcatctgtaacacggcaggatctggt
cagcaggccgtccggtttggacctccatttctcatgcgtgaggacaggagcatctcctgg
gatcagctgcagcagagcatcctcagcaagctctgttatctgatgctgaatggatctcag
gctcagaacgccggccttctctttaagatcagagtcgtgggcggatcagcagcctacagc
tatctgtcccctcaagacagcagacctctataccaccctgcagttgacagagctctgaag
ttctgtggtgccggcgggcctcctcacgtcaagctcgtcatcgagtgggagcacaagact
aaagaatgtctgtttggcagcatccaggaggaggtggtgaaagatgcagagagtgtgaga
aaccagcagcagcagcacctgcagcagcatagctgtactctggatgaatgcttccagctg
tataccaaagaagagcagctggccccggacgatgcctggaagtgtccccactgtaagcag
ctccagcagggcatggtgaagatgagcctgtggactctccccgacatcctcatcctccat
ctcaagcgcttccgacaggtcggcgagcggaggaacaagctgtccaccctggtgcgtttc
cccctgactggtctggacatggccccacatgtggtgaagaggagtcagagtatgaggaac
ctaaacttaggaggctggaagcagcaccaccaacctgccgacatgatcctcccccacgac
tacctgtacgacctctacgctgtgtgcaaccatcacggagggatgcacggaggacattac
accgcttactgcaggaactcggtggatggacagtggtatagctacgacgacagcagcgtc
gacttggtgccagaggaagaagtgtgtacaagaggagcttacatccttttctaccagaga
cgcaacaccatccctccatggtcggccagttgctccgtcagaggatccacaagttcgtca
atgtcagaccactggttaatccggctcacaggggacagtaagagaggcagtctggtctct
cgatcctccacgacctgcccctcttccatacctgactcacccgagtctccggtcttcctt
agcaatgattctaaagaggaacgaggggggtttgatagcaggccgttcatcaggggtctt
cagggacgcagcgtaagcatgagaacacccagcaagaccaaggacaccctgagcaaagtg
tttcccctgcgctggtccttaggttcaaaggacagacggaaacctgatccagtacctcca
cctgtgcaagatcccgcccccgtggagttagtgcagtacctggaatctggccgccggccc
cggtgcacaaaggatccaatagtcacattgatgagcgaatcacgcaacacaaaggaaacc
gctgagggccagtctgcaaccaacgtccgatcttccagtgttgggagcataagttgtgtg
ggtaagatgggatatgagtccccacaggtcccagagggccagaggaggccatcgctcaag
acagccagcttgagacgtagcaaggggagccagacccgagaggagagcaccgcgaatatc
agcagtagctccagcagtaacactctcaccaggaggaaggaagccaggaagcagagctcc
tccaaagcatcccaagatacagagacaaaaaggagctccagcactggagttcagccaagc
tacagcactcccagccttcatgacgggactctgagaagacaaaaaggggacaggactgat
agggaacaccacggtacacatgaaggaaactctaaaaccaagaaagcagaagtgcccaag
agccacgagggactgttctccttcttcaaaggtaacttcctgaagaaggacaaggactca
aggaagtccagggagggtgcatcagtgaaagaaggagctgaggaaggaagccgaaggacc
ctctctaggctctcactgtccaatggagcagcaggaggagctggggtagaaggaggcagg
tcgaatggctcgagtcatctgggtgacgaattggcaaacgggaaggtgggacgaagtgcg
gccgacatcaagcgctcccagagctcctccaacatccccaccaaagcggagcagagcatg
cgcaggacggcatctctgcatcgtaacgggatgtccacagctccggcatcacgcagcctg
gcaacagacaagccatcttatggcaccctgcagaggactcgttatagcacaacctcgctg
ggacgcaaaaagacagtccctgagtccagcttctga
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