Larimichthys crocea (large yellow croaker): 104940007
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Entry
104940007 CDS
T04659
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lco03016
]
104940007 (tarbp1)
03036 Chromosome and associated proteins [BR:
lco03036
]
104940007 (tarbp1)
Enzymes [BR:
lco01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
104940007 (tarbp1)
Transfer RNA biogenesis [BR:
lco03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
104940007 (tarbp1)
Chromosome and associated proteins [BR:
lco03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104940007 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
104940007
NCBI-ProteinID:
XP_019131183
LinkDB
All DBs
Position
III:complement(13574037..13586054)
Genome browser
AA seq
1624 aa
AA seq
DB search
MYSVLINAVLSSSPDYGLLFESLSWPRDSRPGTERVGALTAFIEGLGPLMTDSDTTPLTA
ANKIAIKDKIESVIWTQCLPLLSTISAEAGEGMRSRESTAAACRLMSVCVPLCDEAVPGR
VALSVLPSLQLSEEEVPGAGRLNVEVASEVMAALIPSLSVDDQLTLTILTSALSCIKTLP
DALVSKITVRLLVTLLTCCSGVRLESSLDLILGDLCSWHTTDRTPVVTERALLCLTALSD
HLLKPHRVSSSSSCEPRLSRMFWTMVQDGLTHRDSVSRKRALYLLKKCVALSEEEGVDCP
VSPPGEEEVLFRWAANRSKLLREFWEDYALVMETLEENQVHVVRPVLNRIDTLIQTTVND
SQASGQGLFHPSWLLCVYQRMFHSENKSLMREGVCHLLELQVLQQPDFAVAFSQFIVGPF
MDVLSETSLFQRSVGQSVGDCPELGVKLQVFMATFFSSLPPEHRGHMLLQMIQQLCSKHW
CAVPLLFLSQALSKLPSSPLLGINGLTALREVLRCTMITHQVLLRGAAQCFLLNGALCLM
DVSAVTLDDVFSFLMDFRADESLCRGTQIWNQLCAWLLDNEGSFKPRILDGDCTGAATKK
ETIRGYVESEIYMYLRVPASTGHTERLPDPKDAEKLARAILLCVDMERDQLGAEKSNTLE
SLLSPLLDTLSRVSTNIYLPLRKSDKSLQLVLQLFQLGGIPSCQHTVGEPVDNVMVTMER
LIFKLVDPIQEFILRRLFGELQELFDVERAELYLCVLRQLVVMYSSAPQHRNKIQQTYFP
KLIKHSLSVLQEPSQQIHSVGNQVARAVAMASLATVCSLVEQGVIGMQSETISVLKSLND
YFYSPGPSASQSPSSVGNFNKRLQRPQTGDSLSDVGVQDRLLKDWGRIAANFMRDQWICL
SFLIKSLGVPESVEISRVSETLKAALGCSVEALSLLPSDLVLPVLTFMETVLPELLLSEE
VLCVEAVTLSWELVQGLSTNAHDFWLALKGFISMAFHHKLLVLTDSQAPTVVTTLKQIAT
ELMELSQSKSGVFGVLLQHCCEMWLPTDRGSSNRADTLFSSVFSHVSILSEACVYGPVFR
RDQRLIQDVQTYVEQLGEECAANVAVTSDNKDDQLPRTCVLAFLSRLDSSNLQHQRLMEE
LVMDLLKKDTDISKSKVRYYSNSLQHRIKNRVWQTLLLLLPRLREEFVATLVKRVFEAGF
CSNQASVKYLIEWMMILILVQYPQHMDSFWTCFSMDHEKTKTSSCTFLSVLVHFNVIISN
LKDEAVQLRTALDIILQWCFNHNFSVRLYALLALKRVWSLAEVRAEEGAEGFGGLSTVIK
ACLNQAEAMQSTGNANKNWIRIQEHFFFGAFHPIRDYSVETIFYTFPSLSELADDEWIPP
WKFEKLSCFSESPSFPLRNPAPDLNQLQPGDWIQQDKGEQSKEDRWTEVQKKITPWRLGI
NEQEPELQLVPQQRAARLGKLHGALLVVASLIDKPTNLGGLCRTCEIFGASALVLDSLRH
VSDKSFQSLSVSSELWLPLLEVKPMELTDFLQVKKSEGYCIVGVEQTANSQSLQDYKFPE
KTLLLLGNEREGIPANLLQMFDVCVEIPQQGVIRSLNVHVSAALLIWEYTRQRLTSSEVN
SKCS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgtattccgttttaattaacgcggttttgtccagctctcctgactacggccttttgttt
gagtctctgtcatggccgagggactctcgcccggggacggagcgagtcggggcgctgaca
gctttcattgagggactcggtccactcatgaccgactcggacacgactccgttgacagct
gcgaataaaatagctattaaagacaaaatcgagtcggtgatctggacccagtgtctacct
cttctctccacaatatcagcagaagccggtgaaggcatgcggagcagggagagtaccgct
gctgcctgccgactcatgagtgtctgtgtcccgctgtgtgacgaggctgtgccggggcgg
gtagctctgtctgtcctgccgtcgctccagctgtcggaggaggaggtgcccggtgcggga
cgactcaatgtggaggttgctagtgaagtcatggctgctctcataccttctctgtcagtg
gatgatcagctcacactcaccatcctgacatccgccttgtcctgcatcaaaacactcccc
gatgcactggtgtccaaaatcacagtccggcttctcgtaaccctgctgacctgctgcagc
ggtgtgaggttagaaagcagcctggacttgatcctgggtgatctgtgcagctggcacacc
actgaccgcacacctgtggtgacagagcgggcactgctgtgtctgaccgccctgtcagac
cacctgctgaaacctcacagggtttcctcttcgtcctcctgtgagcctcgtctgtcccgc
atgttctggacgatggttcaggatggactcacgcacagagacagcgtgtcacgtaagagg
gcgttgtacctgctgaaaaagtgcgtggccttgtcagaggaggagggggtggactgtcct
gtctctccaccaggggaagaagaggtcttgttcaggtgggccgccaacaggagcaagttg
cttcgagagttctgggaggattacgctctggtgatggagaccctggaggaaaaccaggtt
catgtagtccggccagttttaaacagaatagacacgctgatccaaacaacagtgaacgac
agtcaagcttcaggtcaaggcctcttccacccctcgtggctgctgtgtgtgtaccagcgg
atgttccatagtgaaaacaaatccttaatgagagagggagtgtgtcatctgctcgagctg
caggttctgcagcagccagactttgctgtggccttttctcagttcatcgttggccctttc
atggatgttctgtctgaaacttcgctcttccaaaggtcagttggacagagcgtaggagac
tgtcctgagcttggtgttaaactccaagtcttcatggccaccttcttcagcagcctgcca
ccagagcatagaggccatatgttgctgcagatgattcagcagctgtgctccaagcactgg
tgtgcggtacccctcctgttcctctcccaagctctatccaaactcccatcgagtccactg
ctggggatcaacgggctgactgctctcagggaggtactgcgctgcaccatgatcactcat
caagtcctgctgagaggtgccgctcagtgcttcctgctgaacggcgccctctgtctcatg
gatgtgagtgcagtgaccctagacgatgtttttagtttcctgatggattttcgtgcagac
gagtcgctgtgtagaggcacacagatctggaaccagttatgtgcctggctattggacaat
gaaggcagtttcaagcccaggattctggatggagattgtactggtgctgccacaaagaaa
gaaactataagaggttatgttgaaagcgagatatacatgtatctccgagtcccagctagc
acaggtcacactgagaggttacctgaccctaaagatgctgaaaagttggcccgggctatt
ctgttgtgcgtggacatggagagagatcaactcggggcagagaagagtaacactctggag
tcattactctctccgctgctggacactctaagcagagtcagcaccaatatctacctgcct
ctgcgtaagagtgacaagagccttcagctcgtcctccagctgttccagcttggaggaata
ccaagctgtcagcacactgtaggggagccagtggataatgtgatggtaaccatggagagg
ctcatttttaaacttgtcgatccaatccaggagtttatcctgaggcgactgtttggggag
ctgcaggagctgtttgatgtggagcgggcagagctgtatctgtgtgtcctgcggcagctg
gtggtcatgtacagttctgcaccacagcaccgtaataaaattcagcaaacctatttccct
aaactcatcaagcacagcctcagtgtcctgcaagaaccaagtcagcagatccactctgtg
ggaaaccaggtggcaagagctgttgctatggcttccctggctacagtatgtagtcttgtg
gagcagggtgtgattggcatgcaatcagagaccatttctgtcctgaaatcactgaatgac
tacttctacagtccagggccatctgcctcccaaagtccatcctctgtgggaaacttcaat
aaacgcctgcaaagaccacagacaggagacagtttaagcgatgtaggagtgcaggatcgt
ctgctgaaggactggggacgcatcgctgccaattttatgcgggaccagtggatttgtctg
agcttccttattaagtctcttggggttcccgagtctgtagagatttccagagtgtccgag
actctcaaggctgctctgggctgcagtgtggaggccctgtctctgctgcccagtgacctg
gtgctgcctgtactcacctttatggagacagtgctgccagaattactactttctgaggag
gtcctctgtgtggaggctgtgactctgagctgggagctggtgcaggggctgtccactaat
gcccatgacttctggctggctctgaaaggcttcatctccatggccttccaccataaactg
ctcgtgctgacagattcccaggctccgacagtcgtcaccaccctgaagcagattgccact
gagctgatggagctgtcacagtcaaagagtggagtattcggtgtgctgcttcaacactgc
tgtgagatgtggctgcctacagacagaggcagcagcaacagggcagacacattgttttct
agtgttttcagccacgtcagcatactcagtgaggcttgtgtctatggaccagtgttcagg
agagatcagcggctcattcaggatgtccaaacatatgtggagcaactcggcgaagagtgt
gccgccaatgttgcagttacaagtgataacaaggatgatcagttgcctcgcacatgtgtg
ctggctttcctcagccgcctggattcctctaatctgcagcatcaaagactgatggaggaa
ctggttatggatttgttgaaaaaggatactgacatatcaaagtcaaaagtgcgttactat
agcaactccctgcaacatcgtatcaaaaacagagtatggcagacactgctactgttgctg
cccagactcagagaggagtttgtcgccacgttggtgaaacgtgtgtttgaggccggattc
tgcagtaaccaggcctcagtcaagtacctgatcgagtggatgatgattctgatccttgtc
cagtatccgcaacacatggacagcttttggacctgcttcagcatggatcatgagaagacc
aagacaagcagctgcaccttcctttcagtcctggtacatttcaacgtcatcatttctaat
cttaaggatgaggcagtgcagttgagaacggcgctggatatcatcctgcagtggtgcttc
aaccataacttcagcgtgcgcctgtatgccttactggccctgaagagggtgtggagcttg
gctgaagtccgtgcagaggaaggcgccgagggttttggaggactgtccactgtgatcaaa
gcctgtctgaaccaggctgaggccatgcagagcacaggaaatgccaacaagaactggata
aggattcaggagcacttcttctttggcgcgtttcatcctatccgggattacagcgttgag
accatattctatactttccccagtctgtcagagttggctgatgatgagtggattccaccc
tggaagtttgagaaactgtcgtgtttctctgagagtccatctttccctttaagaaatcct
gctcccgacctgaaccagctccagcctggagactggatccagcaagacaaaggtgagcag
agtaaggaggaccgctggactgaggtgcagaagaagatcactccctggaggctggggatc
aacgaacaggagcccgaacttcagctggttccacaacagagggccgctcgactgggcaaa
ctgcatggcgccctgctggtggtagcctcacttatcgacaagcccaccaatttaggaggt
ctgtgcaggacctgtgaaatctttggggccagcgctctggttctggacagcctccgccat
gtcagcgacaaaagttttcagtccctgagcgtctcctctgagctgtggcttcctctatta
gaggtgaagccgatggagctcaccgacttcctgcaggtaaagaagagtgaggggtactgc
atcgttggagtggagcagacagccaacagtcagagcctccaggactacaagttccctgag
aagaccctgctccttctgggcaatgaacgagaaggcatccccgccaatttgctccaaatg
tttgatgtgtgtgtggaaatcccccaacagggggtcatccgttcactcaacgttcacgtg
agcgctgccctcctgatttgggaatatacacggcaacgcctcacctcatctgaagtcaac
tcgaaatgcagctga
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integrated database retrieval system
