Larimichthys crocea (large yellow croaker): 109136685
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Entry
109136685 CDS
T04659
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109136685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lco04121
]
109136685
Enzymes [BR:
lco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109136685
Ubiquitin system [BR:
lco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
109136685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
PRY
zf-C3HC4_2
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_2
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
109136685
NCBI-ProteinID:
XP_019115463
UniProt:
A0A6G0HGX8
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Position
XIX:complement(4857341..4912449)
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AA seq
689 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCATNEPVQSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGLPLPLPLPAPHSGPNSPGEEGSNRL
ALVPVSAAMSSPGTPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTG
HRLIEPMPDSHLRGLQCLEHEEEKVNMYCVSDDQLICSLCKLVGRHRDHQVAALSDRYEK
LRQALDSNLSNLIKRNNELESLMGKLIQTCQHVEVNASRQESKLLEECDVLIDIIQQRRQ
IIGSKIKEGKAQRLRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSINER
VSMATASTQVLIPEIHLTDTFDTFALDFAREKKLLESLDYLTAPNAPSIREELCTASYDT
IAVHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTK
YIFVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHS
QERFTSQSSYGVVGNVFIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLC
RCNNSWVVRHNSKELAIEPSPHLRRVGVLLDYDAGYLTFYDAVGSQHLHTFHVSFVQPVC
PVFNVWNKCLTILTGLPIPDHLEGLDPQD
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggagtcagagctaacctgcccaatctgcctggagctttttgaagaccca
ctactgctcccctgtgcccacagcctgtgcttcggctgcgcacaccgcatcctcatctct
cactgcgccaccaacgaacctgttcagagcatcggcgccttccagtgccccacctgtaga
tatgtcatttccctgagtccagagagaggattagaaggacttaagagaaacgtgaccttg
cagaacattatcgatagagttcagcgagcctcatcttcagctgggctcccattaccactg
ccattgcctgcaccccacagcgggcccaactctcccggcgaagaagggagcaaccgattg
gcgctggtccccgtcagcgccgccatgtcaagcccaggtacgcctcccgaaccggtccag
tgccagttctgcgagcaggacccgccgcaggacgccgtcaagacatgcgtgacgtgcgag
gtgtcgtactgcgaggagtgcctcagagcgactcacccgaacaagaagccgttcacgggc
caccggctcatcgagccaatgccggactcccatctcagagggctccaatgcctggagcac
gaggaggagaaggtgaacatgtactgtgtcagtgacgatcagctgatctgctcgctgtgc
aaactggtcggaaggcacagagaccaccaggtggcagcgctgagcgaccgctacgaaaaa
ctcaggcaagccctggactccaacctgagcaatctgatcaagaggaacaatgagctggag
tcgcttatggggaaactcatccagacttgtcaacacgtagaggtgaatgcgtcccgtcag
gagagcaagctcctggaggagtgcgacgtcctgattgacattattcagcagaggaggcag
atcattggcagcaagatcaaagaggggaaggcgcagaggcttcggaagctcgcccagcag
atctccaactgcaagcagtgcatcgagaggtcctcggccctcatcacacaggccgatcag
actctgaaagaaaccgatcacgctcgtttcctccagactgccaagagcatcaatgagagg
gtttccatggcaactgcatcaacccaagtgctgatccctgagatccacctaacggacacc
tttgacacttttgccctggacttcgccagagagaagaagttgctggagagtctggattat
cttactgctccaaatgctccgagcattagggaggagctgtgcacggcttcctacgacacc
atcgccgtccactggacgtctgatgatgaattcacggtggtgtcctacgagctccagtac
gccatcttcaccggacagtctaacattgccagtctgtgtaactcgttggagagctggatg
attgttcccaacatcaagcagaaccactacacagtgcacggtctgcagagcggcaccaag
tatatctttgttgtcaaggccattaaccaagcgggaagcaggagcagtgaaccggggaca
ctgaagaccaacagtcagccgttcaagctggatcccaaatccgcccacaagaagctgaag
gtgtcccacgacaacctgacagtggagcgggatgaaaccacctccaagaaaggccacagc
caggagcgtttcaccagccagagcagctatggcgtggtgggaaatgtcttcattgatagt
ggtcgtcactactgggaggctttaattggagggagcacatggtacgctgtgggcatagcc
tacaaatcagcccccaagcacgagtggatcggcaagaactcggcctcctgggtgctctgc
cgctgcaacaactcctgggtggttcgccacaacagcaaagagcttgccatcgagccctcg
ccccacctgcgacgcgtcggggtcctgttagactacgacgccggctacctgaccttctac
gatgcggtgggctcccagcacctgcacacctttcacgtctccttcgtccagccagtgtgc
cctgttttcaacgtgtggaataagtgtctgacgattctcactggcctacccatccccgac
catctagagggactggatccccaagactga
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