Larimichthys crocea (large yellow croaker): 109136710
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Entry
109136710 CDS
T04659
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
109136710 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lco03400
]
109136710 (lig3)
Enzymes [BR:
lco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109136710 (lig3)
DNA repair and recombination proteins [BR:
lco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
109136710 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
FAD_binding_1
Motif
Other DBs
NCBI-GeneID:
109136710
NCBI-ProteinID:
XP_019108398
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All DBs
Position
III:complement(39733088..39749464)
Genome browser
AA seq
996 aa
AA seq
DB search
MQRPLVFLAYKTVCVGLQPPGIIVGCQQLPKLCRAFSAVHVLNFPRQIHHFSLVSNTHRL
LQVDPPQLSLHQRFSSPPDMSEQRFIVEYAKRGTAGCKKCKDKIAKGIVRIGKIVPNPFS
ESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEEMQDEDKELINKHVSDLMAKV
NASPKKKVQAKLNTTGQLMAPPADPSVNAPRKFSGFTATKAGSSSSSPGPSSSPAKASQG
STLSAQLCDPQHKDCLLREFRKLCAMVAENNSYNVKTQIIEKFLRKGSGGDKFHGDLYLT
VKLLLPGVVKSVYNLNDKQIVKLFSRIFRCNQDDMVRDLEQGDVSETVRMFFEESKSFPA
AAKSLLTIQEVDAFLTRLAQLTKEDEQQTELENIAKKCTGNDLKCIIRLIKHDLKMNSGA
KHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQEASNGSGPRKLLTVEASLMTPVQPMLA
EACKSVEYAMKKCPNGMYSEIKYDGERVQVHKNGDSFSYFSRSLKPVLPHKVAHFKDYIP
QAFPGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIFFNGVSLM
ERPLCERRKFMHDNMVEVPNRILFSEMKHVTRAADLADMITRVIREGLEGLVLKDVRGGY
EPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCTV
TKCSGGYDDATLARLQKELDVIKISKEPSKIPGWLKIIKNYYPDFIIRNPEEAPVWEITG
AEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLKELFRISKENSDFKVTAGPSD
EKGSSGGDSGGNSPSPSSRGSAPPKKTNSRSTPKPKVVKSEPRSPGPEAPSAKKVKNVHS
NGQSKAKATSQLLEPRNDKTLLDIFSGVKLFLPDSVQDYDKLRRYFVAYDGDLVADYDTA
SATHTLAEPEEDGQAQKVSPSWIWECIRKRRVVPPC
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaccacttgtttttttagcatacaagactgtctgtgtaggcctacaacctcct
ggaataattgtcgggtgtcagcaactccctaaactgtgtagagccttttcagctgttcat
gtgttaaattttccccgacaaatccatcacttctccttggtatccaatacacacagactc
ctccaagtcgatcctccccagctttctctacatcagcgtttctccagcccgccagacatg
tcagaacaaaggttcatcgttgagtacgccaaacgtggcactgctggatgtaagaaatgc
aaagacaaaatcgcaaagggcatagtacgcataggcaagatcgtgcccaaccctttcagc
gagtctgcaggggagatgaaagagtggtaccatgtgaagtgtatatttgagaagctggaa
agggcgagagccaccacgaagaagattgaggacatcacagatctggagggctgggaggag
atgcaggatgaagacaaggagctcattaataaacatgtttcagacctgatggctaaagtc
aatgcaagtccaaagaagaaggtgcaggccaagttgaacaccaccggccagctaatggcc
cctcctgcggacccatctgtcaatgctccacgcaagttctcaggcttcactgctacaaag
gccggcagctccagctccagcccggggccgtcctcctcacctgccaaagccagccaaggc
agcaccttgtccgctcagctttgtgacccccagcacaaggactgcctcctgcgagagttt
cgcaagctctgcgccatggtggcagaaaacaacagctacaatgtcaagacacagatcatt
gaaaagttcctcaggaagggctccggtggagataagttccatggagatctttatctgacg
gtaaagctgctcctgccaggcgtcgtaaaaagtgtctacaacctcaacgacaagcagatc
gtgaaactcttcagtcgcatattcagatgcaaccaggatgacatggtgcgcgatctggag
cagggcgacgtgtctgagacggtgaggatgttcttcgaggagagtaaatcattcccagcg
gctgccaagagcctcctgaccatccaggaagtggatgccttcctgacccgccttgcccag
ctgacgaaggaggatgagcagcagaccgagctggagaatattgccaaaaagtgcaccggt
aatgacctgaaatgcatcattcgacttattaaacatgacctgaagatgaattccggagca
aaacacgtcttggatgctgtggatccaaatgcgtacgatgccttcaaggcctcgcgtaat
ctgggcgacgtgattgatagggtgttgaggaatcagcaggaggcgtctaatggatcggga
cccaggaaactcctcactgtggaggcctcactcatgacccccgttcagccaatgttggca
gaggcgtgtaaatccgtcgagtacgccatgaagaaatgccccaacgggatgtactctgag
atcaagtacgatggagaacgtgtgcaggtccacaagaatggagacagcttcagctacttc
agccgcagcctcaagccggtgctgccacacaaagttgcccatttcaaggactacattcct
caggcttttcccggaggtcacagtatgatattggatgctgaagtcctcctaattgacaca
aacacaagtaaacccctgccctttgggaccctgggtgtccacaagaaagcagcttttcag
gatgccaacgtgtgcctttttgttttcgactgtatcttcttcaatggcgtgagcctcatg
gagaggcctctgtgtgaacgcaggaagttcatgcatgacaacatggttgaagtccccaac
aggatcctgttctcagagatgaagcacgtcactagggcagcagatctggctgatatgata
actcgtgtcatcagagagggacttgaaggcctggtgcttaaagacgtaaggggcggctac
gaaccgggaaagcgtcactggctgaaggtgaagaaggactacctgaacgaaggggcgatg
gcagacacagctgacctcgtggttcttggggccttttatggaaaaggctcaaacgggggc
atcatgtccagttttctaatgggctgttatgacccagactccaagaaatggtgcacagtc
accaagtgctccggaggctacgatgacgccaccttggccaggctccaaaaagagctggat
gtgatcaaaatcagcaaggagccaagcaaaatcccaggctggttgaaaatcatcaagaac
tattatccagatttcattattcgcaatcctgaggaagcacctgtctgggagatcacaggc
gctgagttttccaaatcagaaatgcacacggctgatggcatctccatccgctttccccgc
atgacacgcatccgtgatgacaaggactggaagactgccaccaacttgcaccagcttaaa
gagctgtttcgcatatcaaaggagaacagcgactttaaagtgacagctggaccttccgac
gagaagggctcgtcaggaggggacagcggagggaactccccgtcgccctcgtcccgtgga
agcgctccacccaagaagaccaacagcagaagcacacccaaaccaaaggtggtgaaatcg
gagcctcgcagtccaggcccagaagcacccagtgccaagaaggtgaaaaatgttcacagc
aacggacaaagcaaagcaaaggcaacctctcaactgctggagccaaggaacgacaagacg
ctgctggacatcttcagtggggtgaagcttttcctgccggactctgtacaggactatgac
aaactgaggcgctactttgtggcgtacgacggagacctcgtagcggactatgacaccgcc
tcagccacacatacgctggctgaacctgaagaggacggccaagcccagaaagtctcaccc
agctggatctgggagtgtatccgcaagaggcgtgtcgtacctccctgttaa
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