KEGG   Larimichthys crocea (large yellow croaker): 109139028
Entry
109139028         CDS       T04659                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
lco  Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:lco00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lco03400]
    109139028 (mdc1)
DNA repair and recombination proteins [BR:lco03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    109139028 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 BRCT BRCT_3
Other DBs
NCBI-GeneID: 109139028
NCBI-ProteinID: XP_027145497
LinkDB
Position
XVI:complement(4277797..4290213)
AA seq 2185 aa
MDATQMINDSILESDEEENEEENENKRGRPLAKLCILKNQHIPEAELPLFLGENTLGRDP
NTCTVPLPAASISKQHAAICISVYRRRGCHSEVDVEALVWDLGSMNGTRKGHLKLTPNVR
YALSERDRLVVADIPCQYVSCAVDIVSSQGDTISVSRNSGVKARLADASGEKGGDTSTGG
KKCVNGGTKARVSLPDLEDTGKTPVRTGCLTFEQTPTQPQGTLVPESDSDSEGERGGANR
RHKALVSDSDKSSPTCSTFLSPTNRIASVDESPITPSSSTKNRPSRHVSFSMETDIYVGR
QQLKEKKALVIVDDSEEEEERAALGGRKSDGCNVSLTGEDESPVSTAEVAIPAFNMDSDT
DVEGEEEGVACTGPVTLNTNQQADQPPNTAQFHMDSDTDVDEDDDAIDKIPKSVPSSADN
TKPPHVISVIQPEAITMDSDTDVDDDAVVSDAASEAKPVSFQSTETADSAPSMQIKDFYL
DSDTDVDEEEEKGSRTINTCSKIDETPTRLDIKSTGAESAAVTAHSLHLDSDTDDETVPA
PVISEPSAASAVTKSCIAEDTGSDVDALSDSDTDDDSCLVIPCVATTLKFVPCNAPEALQ
SDSDADTDVDEPSVPPAGDGVNPADLTVDSDTDVEDEKVMSAGDSQVPSLQRENTPGLLV
PLLQNCSTPVQGGEVEDMDTQAFLSPSSCPFRSAVASAVRLESLSSCSGSQEDEDFVVAE
TQSFILQTRDCQDNTPEDHSKPPNRAFGPESSGDENGEQSGRQGSFQLGLSDSSHLQDQA
QVLAMESTQAFVSVERGLNMEETRPYAAISNAERTSVENESNLEATQDYGEEEEPARCSV
TSEIEDQVDLALEATQAYISEPSDSEDKTDEDERKDTATQPLDFPVSSTLTMMETQPMSV
FEEEECLDEENPFCSGLQVKARPQNETQEREEPEEDEPQARTLSKALSIAETQPMHASDN
EESDEEDLIPGPRRGKAQPLQPVDEQTEPFTSSALSLAETQPAHICVDETQPVATSGNVE
SDVGDSIRHTNSELSAVEGQPMDTGKDGESDKEDSIPALRKRKAKPLQLEDESQTLTNSE
LSAVEAQPMVTGDDGETDEEDSLPLIRKRKAKPLQLDESQMLTNSELSAVEGQPMDTRED
GESDDEDSMPVIRKRKAKPLQLEEESQTLTNSELSAVEGQPTDTREDGGSDDEDSMPVIR
KRKAKPLQLEEESQTLTNSELSAVEAQPVVTGDDGKNDDEDSVPGPRKRKAKPLQIQEEE
TQTLTNSEASTVETQPLETDSDLQPQRGKGGQSEVGTSGITIRGKTGTRGRLREEEGQAG
SSELPKRQTRGKNKVLQTTRGSRGKSRPGEDEEVERAKQARGKNSISQPKDDEKEEETEV
NKHAENINLIKEQEAGRLVEEGEKERREMDERERTQEERKQRREEQEKLERERKEKEEQE
ARNAERLRLEHERAEKETIERERKEQEEKERADRAQKEKEQLERERKKEEKERLEHEKAE
REDRERLEREENERIEKERKEQEENARLETAKRELEERLERERKEQEHQERLESEAKERE
NKPKAPARGRRAARRTTAATCTTELEQDSTISINDDVPARRTRSRSNSSNSVNSEMSASS
VSTQESSGRGRGRGAKRTSEPPQTAAARSSNRRRTVDAGPTPQGVLLRSNSNNSLNSEIS
SCSLNSQSRGRGGRQRGRGQRTETNSLINSQRDKNSAPKSPARGRKSRKADESCNAVPLE
DEKEKADSQQASTTRGQRRANANDSEPAAADEDDSSYQEEGCATEELVPLKKNIRAKGQK
AVKSKTVEASVAPAVNDGGEAKGKGRKRDLEPNTEEESSSSFKISKGTTEAAEAKTKDKV
PVQAKRRGRASTSQAKKPSTEVEVKEESERMEEEIVERRGRGRPSAVQKKKIQEQEESGS
SVDQDAHVESSEPQTPKSSGSRKRQATADFSPVAKTPRSSSASPAASGRLRTASQAYKVL
FTGVVDEAGERVLARLGGCMAKGVADMKVLVTDKVRRTVKFLCAVAKGIPIVTTQWLEKS
GKAGSFLPPNLFVVNDLEQEKKFNFCLQESLQIASSQPLLQGYEIHVTKSVKPEPVQMKD
IITCSGATFLAKMPSSHKPRTVVISCEEDWFLCGPALTASLPVVTAEFILSGILQQKLDL
QTNALSAPTSNLQPAGGRGRSRKKT
NT seq 6558 nt   +upstreamnt  +downstreamnt
atggatgctactcagatgatcaatgactcaatcttggagtcagatgaggaggaaaatgaa
gaggagaatgaaaacaagagggggagaccattggctaaattgtgcatcttaaaaaatcaa
cacatccctgaggcagagttgcccctttttctgggagaaaatacattgggtcgtgacccc
aacacctgcaccgtgcccttgccagcagcctcaatatccaaacagcatgctgccatctgc
atctctgtctaccggaggagaggttgtcacagtgaagtggacgtagaggcgttggtttgg
gacctagggagcatgaatggcacccgcaagggccacttaaagctgactcctaatgtacgc
tacgccctcagtgaacgtgaccgtttggtggtggcagacatcccgtgtcagtatgtcagc
tgtgctgtagacatagtctcttctcaaggggacacgatttctgtgagcagaaattcaggg
gtaaaggccaggttggcagatgcctcaggagaaaagggaggtgacacaagcacaggggga
aagaaatgtgtcaacggaggtacaaaagctagggtgtcattgcctgatctggaggacaca
gggaagactcctgtcagaactggttgtctgacctttgagcaaaccccaacacagccacag
gggaccctggtcccagaatctgactcagactcagaaggagaaagaggaggtgcaaatagg
cgacacaaggctctcgtgtcagattccgataaatccagtcccacctgttcaacattcttg
agtcccacaaacagaatcgccagtgtggatgaaagtcccatcacaccgtcctcctccact
aaaaataggcctagcagacatgtcagcttcagcatggagacagacatatatgtggggcga
cagcagctgaaggaaaaaaaggcacttgtgattgtggacgacagtgaagaggaggaagaa
agagcagcactaggagggagaaagtctgatggatgcaatgttagtcttacaggagaagat
gaatcgcctgtatctacagcagaagttgcaatccctgcatttaacatggacagtgacact
gatgtagagggagaggaggaaggggtggcatgtacggggcctgtgaccttgaatacaaat
caacaagctgatcagccaccaaacacagcacagtttcacatggacagcgatacagatgtc
gatgaggatgatgacgccatagacaaaatccccaaatctgtgccttcctctgctgacaac
accaaaccgcctcatgttatttcagttattcagccagaggccatcacaatggacagtgac
actgatgtggatgatgatgctgttgtgtcagacgctgcttcagaagcaaaacctgtgtca
tttcagagcacagagacggctgactctgctccttcaatgcagattaaagatttctaccta
gacagtgacacagatgttgatgaggaagaagagaagggcagtagaacaattaatacatgc
tctaaaatagatgaaactcccacaagattagatatcaagtcaactggggctgaatctgcc
gctgtaactgctcacagtttgcatctagatagtgacacagatgatgaaactgtccctgcc
cctgtgatcagtgaaccttcagcagcatctgctgtcactaaatcatgcatcgctgaagac
acaggaagtgatgtggatgctctgtctgacagtgacacagatgatgattcttgtctggtt
ataccttgtgttgccacaaccttgaaatttgttccttgtaatgcaccagaagctcttcag
tcagattctgatgcagacacagatgtggatgaacctagtgtaccccctgccggggatggg
gtcaatccagctgacctcacggtggacagtgacaccgatgtggaagatgagaaggtgatg
agtgctggtgacagccaggttcctagcctacagagagaaaatacaccagggttgctggtt
ccccttcttcagaactgctctactcctgtacaaggaggagaagtggaagatatggacacc
caggcttttctgagtccttcttcatgtccatttaggagtgcagtagcttctgctgtaaga
cttgaatcattatcttcctgctcaggcagccaggaggatgaggattttgtcgtggccgag
acgcagtccttcattcttcagaccagagactgccaagacaacactccagaggaccacagc
aagccccccaaccgagcttttggccctgagtcttctggtgatgaaaacggtgaacagtcc
ggcagacaagggtctttccagttgggattgtctgatagtagccatctgcaggatcaggct
caagttttagccatggagagcacccaagcgtttgtctctgtggaaaggggattgaatatg
gaagagacacgaccatatgcagccatctcaaatgcagaaagaacctctgtagagaatgag
tcaaatctggaggccacacaggattacggagaggaagaggaacctgccagatgttcagta
acatctgaaatagaagaccaggtagatttggcactagaggcaacacaggcctatatttca
gagccctctgattcagaggataaaacagatgaagatgagagaaaagacactgctactcag
cctttagactttcctgtctcatctactcttaccatgatggaaacccaaccgatgtctgta
tttgaggaagaggagtgtttggatgaagaaaatcctttttgctctggactacaagttaag
gcgaggccacagaatgaaacacaagagagggaagaacctgaggaagatgagcctcaggcg
aggaccctcagtaaagctctgtctatagctgaaactcagcccatgcatgcaagtgacaat
gaggaaagtgatgaggaggacttgatcccaggtccacgaagaggaaaagcacaaccactg
cagcctgtagatgagcagacagagcccttcacaagttctgcgttatcacttgctgaaacc
cagcccgcgcacatctgtgttgatgaaacccagcccgtggctacaagtggaaatgtggaa
agtgatgttggagactcaattcgacacacaaactctgagctttctgctgttgaaggtcag
ccaatggatacagggaaagacggagaaagtgataaggaggactcaattccagctttacga
aaaagaaaggcaaaacctctgcaacttgaagacgagtcacaaacactcacaaactctgaa
ctctctgctgttgaagctcagccaatggtcacaggtgatgatggagaaactgatgaagag
gactcactgccacttatacgaaaaagaaaagcaaaacctctgcaacttgacgagtcacaa
atgctcacaaactctgagctctctgctgttgaaggtcagccaatggatacaagggaagat
ggagaaagtgatgatgaggactcaatgccagttataagaaaaagaaaggcaaaacctctg
caacttgaagaagagtcacaaacgctcacaaactctgagctctctgctgttgaaggtcag
ccaacggatacaagggaagatggaggaagtgatgatgaggactcaatgccagttataaga
aaaagaaaggcaaaacctctgcaacttgaagaagagtcacaaacactcacaaactctgag
ctctctgctgttgaagctcagccagtggtcacaggtgatgatggtaaaaatgatgatgag
gactcagttccaggtccaagaaagagaaaagcaaaaccactgcaaatccaagaagaagag
acgcagacactcacaaattctgaggcctccactgttgaaactcagcccttagaaacagac
tctgacctgcagcctcaaaggggaaagggaggacaatctgaggttgggaccagtggcatc
actattagaggtaaaacagggacaaggggaagattaagagaagaagaggggcaggcaggg
tcttctgaacttcccaagagacagacaagagggaagaataaagtgttgcaaactaccaga
ggaagtagagggaaatcaaggcctggcgaggatgaggaggtagagcgggctaagcaagcc
agaggtaaaaattccataagtcaacctaaagatgacgaaaaagaggaagagacagaagta
aacaagcatgctgaaaatattaacctaataaaggaacaagaagcagggagattggtagag
gaaggagagaaggaaagaagggagatggatgaaagagaaaggacacaagaggagagaaag
cagaggagggaagaacaagaaaaattggaaagggaaagaaaagagaaggaagaacaagag
gctagaaatgcagaaaggttaagactcgagcatgagagagcagaaaaagagacaatagag
agggaaagaaaggaacaagaagaaaaggaaagagctgatagggcacaaaaagaaaaagaa
caattggagagggaaaggaagaaggaagaaaaggagagattagagcatgaaaaggctgaa
agagaagacagagagagactggagagagaagaaaacgagagaatagaaaaggaaagaaaa
gagcaggaagaaaacgcaagattggagactgcaaagagggaactggaagagagacttgag
agggagaggaaggagcaagaacaccaagaaagactagagagcgaagcaaaggaaagggaa
aataagcccaaagctcccgcaagaggtcgaagagcagccagaagaacaactgctgccacg
tgtacaacagagctggagcaagactcaacaatatcaatcaatgatgatgtcccagcaagg
agaaccagatctcgctccaactcttccaactctgtcaactcagagatgtctgcttcgagt
gttagcacccaggagagcagcgggaggggtcgaggcagaggagcaaagaggaccagtgag
cccccccagacagctgccgccagaagcagcaataggaggaggacagtggatgcagggcca
actcctcagggagtccttttgaggtcaaactctaacaactccctcaactctgagatttcc
agctgcagcttgaactctcagagtagaggaagaggaggcaggcaacgaggaaggggccaa
agaacagagacaaactctcttattaatagtcagagagataagaattcggctcccaaatct
ccagctagaggcaggaagagcaggaaagcagatgaatcttgtaatgcagttccccttgaa
gatgagaaagagaaggcagactctcagcaggctagtaccacaagggggcaacggcgagcc
aatgcaaatgactctgaacctgcagctgcagatgaggacgactcctcatatcaggaggaa
ggatgtgccactgaagaattagttccacttaaaaagaatatcagggcaaaaggccaaaaa
gcagtaaagagtaaaactgtggaggcatcggtagctcctgcagtcaatgatggaggtgag
gctaaaggaaaaggaagaaaaagagacttggagccaaatacagaggaagaatcaagcagt
agtttcaaaatttccaaaggaacaacagaggcggcagaagctaaaacaaaagacaaggtt
cctgtccaagccaagaggagaggtagagcatccacctctcaagccaagaaaccctccact
gaagtggaggtgaaagaagagagtgagagaatggaggaggagattgttgagaggagaggc
aggggtcggccatcagcggtgcagaaaaagaagatacaggagcaggaagagagtggatcc
tctgtcgaccaggatgcacatgtggagtcatcagagccccagactccaaagagcagtgga
tcccgaaagcgacaggccactgcagatttctcgcctgtggcaaagacacctcgctcctcc
tccgcttcaccggcagctagtggtcgattacgaactgccagccaggcctacaaggtgctg
ttcacaggcgtagtggatgaagcaggagagagagtgttggctcgtttaggcggctgcatg
gcgaaaggtgtggcagacatgaaagttctggtgactgataaggtgcgcaggactgtaaag
ttcctgtgtgcggtcgctaaaggaatccccattgttaccactcaatggctggaaaagagt
gggaaggctgggagcttcctgcctcctaatctttttgttgtaaatgatctggagcaggag
aagaagttcaatttctgcctgcaggagtccctgcagattgccagcagtcagcctctctta
cagggatatgagatccatgttacaaagtcagtgaagccagagccagttcaaatgaaagac
atcatcacctgcagtggagctacctttcttgctaagatgccctcctctcacaagcctcgg
actgtagtgatttcctgcgaggaggactggtttctgtgtggcccggctctcactgcatct
ctcccagtggtcactgctgagttcattctttcagggatcctgcagcagaagctcgacctc
caaaccaacgcactctctgcccctacaagcaatctacaacctgcaggaggcagaggaagg
agcagaaagaagacttag

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