Larimichthys crocea (large yellow croaker): 109139183
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Entry
109139183 CDS
T04659
Name
(RefSeq) protocadherin Fat 4
KO
K16669
protocadherin Fat 4
Organism
lco
Larimichthys crocea (large yellow croaker)
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lco04515
]
109139183
Cell adhesion molecules [BR:
lco04515
]
Cadherins
Cadherin related
109139183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
EGF
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
hEGF
EGF_TEN
EGF_CA
EGF_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
109139183
NCBI-ProteinID:
XP_019117367
LinkDB
All DBs
Position
VII:23422056..23435237
Genome browser
AA seq
3038 aa
AA seq
DB search
MESAGQWRKSAILLFHFLVFNSTSSYQPSFGNTVNVSSERQSADSVLGQHTLPSWYYTSI
DAVPKHDTVSIRSRNRWRTQMAFSKPVYSFEVREDTVPGTVVGKVETAFETLTPITYSVQ
EDDGENLFLLSPLSGEFLLSRSLDFEAQSFYILTVVIQQGDSQVSSVRVYVNVLDVNDNP
PVFSQDTFSASLLEDTRVGTCFLSLNVSDKDDGANGDLKLKVVGGDEEEMFFINPTGSLC
LNTELDREIQPLYNLTVTANDCVQPESLQFTSTALVIVVVEDVNDNAPCFVSANTVSVPE
DTAVHSVIMTVHAKDEDAGYNGEVLYYLNNTSGDVFSIDNRSGIIYLEEALDREQEDILS
ITVTATDKGSPRMATTMNLTVHVIDVNDNDPEFSQSSYSVTVREDIPRGSSLLQVQAHDQ
DFGTNGQMRHILTQASPFVVDAVRGVITVMDKLDRESDSNYTLTITAVDQGNIPRSTTAA
ISVSVLDVNDFAPLFSPETLTIHVMENEEDPSQLIHQFSALDEDLGVNSQLTYFIQKGNS
DGLFSITPNGTFQILHSLDRERESLYSVIIIAVDSGLAPLTGTLNVQVIVDDINDNHPEF
TEEVYNTIVSEDSHTGTVFAMVTASDVDEGLSADIRYSMENIDVPFAIDETSGELFTTDV
LDRETVAIYRLIVIGHDKHPTQPLSSSVVVTVLIGDVNDHWPQFMNSPYVAYVPTEMASG
SVVCAVRATDGDTEMNAELQYSLYGQHSDLFFIYPDSGTVLTSSALQRTEDIVVNVHVED
SGENPKFDVTTISIRFQNMSEFPQMNVDVLNDSLYEDEPVGTLVAVVSAESIRAEPVSFY
LASGNFEDMFHVEQLSGALTVENPLDYENKKEFTLLIEARDSGLPPFSSFVEIHINISDV
NDNFPQFTQPEYRCEVFENSPPSWVCDVLAIDADSGEYSTVQYNITEGNTENLFTIDPEN
GLLSTTESLDRENIAEFNLTVEAAELNNPLHKDRAIVIVVVLDRNDNAPRFSQIFLTEVP
EDSPVGHTILQVTSTDDDTGANAIINYSIIDESDDMPFNIDFTTGYITIERPLDREMQDI
YILKVNANDSAWSISTDVTIVIADVNDNRPVFSDHFYTVVLPETKDKEVFVMQVLATDAD
IGQNREILYVIESQSEEFWVNASSGEIYTKQPMMLQNSTFDIYQFTVTAFDCGSVPLYSN
ATVTVRLEPYNYYPPIFLPFPPLIAIPYYMAVGTEVIQITAIDQDVNNASSVIEYDSNGG
NASDFFWIQADNGKVVLYQSVFESENLVLTLLVIAKDQGSPSLSSQAEITFEITGKNQFS
PSFRERDVTFSVPEDLTVGSVIGKIQAEDEDYGPNGAIKYSITQENPYLPFSVGEASGLL
ILNRELDFETEVIYQLQIKAMDGGRVSKTGMLNVTVVVIDVNDNPPVFSSSEYTTSVAEN
LEIGTNVLDVKTTDADSGVNAQISYSLIAGHVDKFAIDSRNGSITTSEVFDYEREQLFDI
TIKASNNGGHPLFSLAHVVIQIIDINEFTPTFRKKEFNFSVFKNVPVGTKIGEVTATDDD
RGSEGQVFYLMFGQNKYMGFEINKHSGEIYTTGSLRKQGNSRVVLKVMAKNSGVITGIGV
DEALVHISVIDTNDAPEFTSTLYLVNVTEDTPVGTSVLTVTAVDQDSVLDWNRVFFSIES
GNTNSSFAVDPSSGIFLVNSPLDRELLPMYNLTVLATDNGSPPATGTTNVIVTIDDVNDN
APKLTFTEAEVKENQPQGTIVAKLTATDYDLPPNQGPFTYWLVNPTAGSAFSLTTDGVLF
TTRTIDREQTSVYQVLVAVRDAGIPLLSSTTMIQIKILDENDNPSLPRNIFIEVKYFGNS
FQGGMIGNVDPEDQDESDEFSCAIKSGPLNMFTIANNTCELRSSPFQGEATFNITIEATD
HLHFPVNNSIYINYKGFTNASIDSCIFFYVLASSMEEFLTHKYLRFVKALDSLFNLQASK
THVFGIKRIGREILLLAAVKNYNGQYLSREVATGVSAGHKKLLETQGNVTISHITSDPCH
TGPCQNGATCNKNVYISQDVAVLESTAVIFVSPQKEVFNCTCPAGFTGTLCEDDIDECEV
NPCQNNGTCVNTLGGFYCHCQSGFSGFVCSTDVDECLKLKCQNGGTCIPTQDGYRCQCVP
GFEGEVCAQITDHCRSTPCVQGSCTNSQAGFSCQCPFGVSGVHCEDHSYGFEELSFMEFP
PLDRRTNLISLEFATVQRNSLLLYNPGGSSSREFFALEILDGAIHLSYDLGSGPVRLQTN
KQVADGYFHSVTVRRIGNMGSLHVDNCTDVENNGFCFSHSEGRSLARTLDVGSNMTFGGL
RTFESILLHPAQIKTHDFVGCVRNIYVNGILLRPSMALATYNILDRCPRATPSPCHSNPC
KNGGMCHDRWSDYFCECKSLFTGSNCTKEMSEELVLRFDGNDYIEYVIKEQFKRDYLLKD
LLDDEKKGNAKSQTAINIKFKTQDNGVLMFVVGQRGSTLLMIKDRKPVYISKYTLSGRLS
EFTVDSPVTDGVWHVLSLVSNGQNTFLLLDGKAALNISEQSMDLTPASVEKIIFGAAVTD
SNLQQSGFTGCVQYFNVTGYTLPVTGHSEMVDVWPSSTLVQSSCSSVDDCFPSPCSEEAR
RGPNRWRCGPTVQNRSCICLHNVSDHTCDICISDKESHDQCSEEREQGSLPLWLIAVVLP
VISILVFIGMCVVLYRVRRKNAKHRSDNVPQKTEQGTDNVLFCFNDNLTLTGAASAGKQT
QHDPMSADQQRLSVEFYCDASLSNVEPVPNSELDYYEIGSISSAFHSDTASLQLSWTKHL
YSAKCVKSEPKRWADLRMLMAGFKKDSSSEEKAKSPMKPLDKQLLTETDAEEPCYRKVFL
EPVQYLTFEEIRKITTPPEQKMSHRASLRSRPAKCITVIDVSSDSETDSTFTGVESECGQ
FSLIRARKYIQDQSSLSGCSFKQQRILPVSLFLNHTCQPAAGRHKAESSPSGVFEQWENI
LSMHLPFSRYAPVFEDIANLPSQPNHSYDMQSDIEAII
NT seq
9117 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgccggacagtggagaaaatctgcaattttattatttcattttctggtgttt
aatagtacatcctcttatcaaccttcatttggaaacacagtgaatgtgagcagcgagagg
cagtctgcagacagcgtcttaggacagcatacgcttccctcctggtattatacatcaatt
gatgcagtgcccaaacatgacacagtcagcatacgctctcgtaacagatggcgaacacag
atggctttctccaaacctgtttattcatttgaagtgagagaagacacagtaccaggaaca
gttgtgggaaaggtggaaacagcgtttgagactctcacgcctatcacatactcagtgcag
gaggatgacggagagaacctgttcctcctcagccccctctcaggggagttcctattatcc
cgcagcctggattttgaagcacaaagcttctacatactcactgtggtgatccagcagggg
gattcacaggtatccagtgtcagggtgtacgtcaatgtgctggatgtgaacgacaacccc
cctgttttcagtcaggataccttttctgcttcattgcttgaagacacccgtgttggcact
tgcttcttgtccttgaatgtgtctgataaagatgatggtgccaacggagacttgaaactt
aaagtggtgggtggagatgaagaggaaatgttcttcataaacccaactggtagtttatgt
ctaaacacagagctggacagagagatacaacccctctacaatctgactgtgacagccaac
gactgtgtccagcctgagtctttacagttcaccagcacagcacttgttattgtggttgtt
gaggatgtcaatgacaatgcaccgtgctttgtgtcagccaacacagtcagtgtaccagag
gacacagcagttcattctgttataatgactgtacatgctaaggatgaagacgctggatac
aatggggaagttttatattatttaaacaacacctctggtgatgtgtttagcattgacaac
agaagtggaatcatttacctggaggaggcattagacagagaacaggaagatatcctgagt
attactgtaactgccaccgataaaggctcacccaggatggcaaccaccatgaatctcacg
gtgcacgttatagatgtaaatgacaacgaccccgagttctcacaaagctcctacagtgtg
acagtcagagaggatatccccagagggtcgagcctgcttcaggttcaggctcatgatcaa
gattttgggactaatggacaaatgcgccacatattgacccaagcgagtccatttgtggtg
gatgcggttcgaggtgtgatcacagtcatggataaactggacagagagagcgattcaaac
tacactttgaccataacagctgtagatcaggggaacatacccagatctactactgctgct
atcagtgtctcagtgttggatgtcaatgactttgcacccctctttagtccagaaacactg
accatacatgtaatggagaatgaagaggacccctctcagctaatacatcagttttcagct
ttggatgaagatttaggggtcaacagccagcttacgtatttcatacagaaaggaaatagt
gacggtttgttctccatcactcccaatggcacgtttcaaattttacacagcctggacaga
gagagggaatcgttgtactccgtcatcatcattgctgttgattcaggactggcgcctcta
acaggtactctaaatgtacaagtcatagtggatgatatcaatgataaccatccagagttt
actgaagaagtctacaacaccatagtatctgaggacagtcatacaggcactgtgtttgcc
atggtgacagcatctgatgttgatgaaggtctcagtgcggatataaggtattccatggag
aacattgatgtgccttttgccattgacgaaacgtctggagagctgtttacaactgatgtc
ctggacagggagacagtagctatctacaggctgattgtgattggccatgataagcatccc
actcagcctttgtcgagctcagtggttgttactgtgctcattggagatgtaaatgaccac
tggccccagtttatgaacagcccttatgtggcgtatgtgcccaccgagatggcctcaggc
tcagttgtttgtgcagtaagagcaacagatggagatactgaaatgaatgcagagctacag
tattcgttatatggacaacattcagatctgtttttcatctatccagatagtggcactgtt
ttaacttcaagtgctctccagagaacagaagatattgttgtcaatgtacatgtggaagat
tctggagaaaatccaaagtttgacgtcaccaccatcagtatccggtttcagaatatgtct
gagtttcctcagatgaatgtggatgttctgaatgattccctctatgaggacgagccagtg
ggaacattagtggcggttgtctccgcagagagcatcagagctgaacccgtctctttttat
ctagcttctggaaactttgaagacatgtttcatgtggagcaattaagtggagcattgaca
gtggagaaccctctggattatgagaacaagaaggagttcactttgttgatagaagccaga
gactctggtttgccgcctttctcatcatttgtagaaatccacattaacatcagtgatgta
aatgataacttccctcagttcacccaacccgaatacaggtgtgaggtttttgagaactcc
ccaccatcctgggtttgtgatgttctcgctattgatgctgattcaggcgaatatagcaca
gtgcagtacaacataacagaaggaaacactgaaaatcttttcacaattgaccctgaaaac
ggtttattgagcaccactgagagtttagacagagaaaatattgctgaattcaatttaaca
gttgaagccgcagagctaaacaacccacttcataaagacagagcaattgtcattgttgtc
gttttagacagaaatgacaacgcacctcggttttcacagatatttctcacagaggtaccc
gaggattcccctgttggacacacaattctacaagtcacctcaactgatgatgatacaggt
gccaatgcaataattaattactctataattgacgaaagtgatgatatgccatttaatatc
gacttcaccactggctacatcactattgaaagacctctggacagagagatgcaggatatt
tatatcttgaaagtaaacgcaaatgattcagcatggagcattagcactgacgtcactata
gtcattgcagatgtcaatgataatagaccagtattttctgatcatttttacactgtggtc
ctgcctgaaacaaaagacaaagaggtgtttgttatgcaggttcttgctacagatgcagac
atagggcaaaaccgtgagattttgtatgttattgaatcacagagtgaggagttttgggtc
aacgcttcctctggtgaaatctatacaaagcagccaatgatgttacaaaattctactttt
gatatctaccagtttacagtcactgcatttgattgtggcagtgttcctctgtacagtaac
gctactgtcacagtaagactagaaccatacaactactacccaccaatatttttacctttt
ccacctctgattgctataccgtattacatggctgttggtactgaggtgatccagattaca
gcaatagaccaggatgtcaataatgctagcagtgttattgaatatgactcaaatggtggt
aatgcatctgatttcttctggatccaagcggacaacggaaaagtagtgttatatcaaagt
gtgtttgagagtgaaaatttggttctcactttattagttattgcaaaagatcagggctcc
ccctctctatcatcacaggcagaaatcacttttgaaattactggaaagaatcaattttct
ccaagtttcagagagcgagatgtcacattctctgtccctgaagacttgacggtaggatcg
gtaattgggaaaattcaagcagaagatgaggactatggtcccaatggtgccattaagtac
agcattacccaggaaaatccatatttaccattctctgtaggagaagcctctgggctgcta
atactgaatagagagcttgactttgaaacagaagttatttatcaactccaaatcaaagcc
atggatggtggccgcgtctctaaaactggaatgttaaatgttacagtggtagttattgat
gtaaatgacaatcctccagtattttcatcctcagagtacacaacctcagtggcagaaaat
ttagaaattggcacaaatgtcctagatgtgaagactactgatgctgactcaggggtaaat
gcacaaatatcctactctctcattgctggtcatgtggataaatttgcaattgattcaaga
aatggctcaatcaccacctcagaggtctttgattatgagcgagagcagctctttgatata
acaatcaaagcttcaaacaatggtggtcatccattgtttagtttggcacatgttgtcatc
caaatcatagatatcaatgagttcacacctacattcaggaaaaaagaatttaacttttcg
gtatttaaaaatgtgcctgttggaacgaagattggagaagtaacagctacagatgatgac
cgaggctctgaaggtcaggtgttttacctgatgtttggtcaaaacaaatatatgggcttt
gagatcaacaaacattctggagaaatatacacgactggcagtttgaggaaacaaggcaat
agtcgtgtagttttaaaagttatggcgaagaactctggtgttattactggtattggtgta
gatgaggcattggtccacatcagtgtgattgacacaaacgatgcacctgaattcacctcg
acactttatttggtgaatgtcacagaagacaccccagttgggacatctgtcttaactgtg
actgctgtggatcaggactccgtcttggactggaatcgtgttttcttcagtattgaaagt
ggaaacacaaactcctcctttgctgttgatccatccagtggaatttttttagtaaactct
ccacttgatagagaactgttgccaatgtataatctaactgttttagccactgataatggc
tctccaccagccactgggactactaatgtcattgtgactattgatgatgttaacgacaac
gctcccaaactcacatttactgaggcagaagtgaaggaaaatcagcctcaaggtaccata
gttgccaagttaactgccactgattatgatttgccaccaaaccagggacctttcacgtac
tggttggtcaatcctacagcaggtagtgctttttcgctgactactgatggagttttattc
actacaaggactattgatcgggaacaaacctctgtatatcaagtcctggtggctgttagg
gatgcagggatccctctgctgtcatcaacaacaatgatccagatcaagattctggatgaa
aatgataacccctcattgcccagaaatatcttcattgaggtgaaatattttggaaattct
ttccaaggaggaatgatcggcaatgttgatcctgaggatcaggatgagtctgatgaattc
agctgcgccatcaaaagtggaccacttaatatgtttacaatagcaaataacacatgtgag
ctgaggtcgtctccttttcaaggtgaggcgacatttaacatcactattgaagctacagac
caccttcacttccccgtcaacaacagcatctatataaactacaaaggattcacgaatgcc
tccatagacagctgcatcttcttctatgtgttagcatcttcaatggaagaatttttaaca
cataagtatttgcggtttgtgaaagctttggacagtctgtttaacctacaggcttctaag
actcatgtatttggaatcaagcgtattggcagggaaatccttcttttggctgcggttaaa
aattataacggtcaatatctcagcagagaagtagccactggtgtctctgcaggccataag
aaactactggagactcagggtaatgtgacgatctcccacatcacaagtgatccatgtcac
accggcccttgtcaaaatggggcaacgtgcaacaaaaacgtttacatcagtcaggatgtt
gctgttctggaaagcacggcggtcatttttgtgtcaccgcagaaagaggtttttaattgc
acctgcccagcaggcttcaccgggacactgtgtgaagatgacattgatgaatgtgaggtg
aatccctgtcagaataatggcacatgtgtgaatactctgggaggtttctattgccactgt
cagagtggcttctctggctttgtctgttctactgatgtagacgaatgcctgaagctaaaa
tgccaaaacggaggaacttgtattcccactcaggatggatatcgctgtcagtgtgtgcct
ggatttgaaggagaagtgtgtgcgcagatcacggaccactgtagatcaactccctgtgtt
cagggaagctgcaccaattcacaggcagggttttcctgtcagtgtccctttggcgtcagt
ggagtccactgtgaggaccacagttatggctttgaggaactgtccttcatggagtttccc
ccgttggaccgcaggactaatttaatttctctagagttcgcgacagtgcagaggaactct
ttgctcctgtacaaccctggaggatcgtccagcagagagttctttgccctggagatactg
gacggggcaatacatctgtcttatgacctgggatcaggacctgtaaggctgcagacaaac
aagcaagtggcagatggatattttcacagtgtcactgtcaggaggattggcaatatgggt
tctttgcatgtggacaactgcacagatgttgagaacaatggattttgcttttcacacagt
gaaggcagaagcttagcgaggacactagacgttggcagtaatatgacatttggaggtctg
aggacttttgaatctattttactgcaccctgctcagataaaaacccatgactttgttggg
tgtgtccgcaacatttatgtgaacggcatcctgctgagaccttcaatggcccttgcaaca
tataacatccttgataggtgtcctcgggcaacaccatcaccatgtcacagcaacccatgt
aagaacggcggcatgtgccatgatcgttggtctgactatttttgtgagtgcaaaagcctt
ttcactggaagcaactgcactaaagaaatgtcagaagagcttgtattgcgatttgatggg
aatgactacattgaatatgtcatcaaggagcaattcaagagagactacctactaaaagac
ttgctggatgatgaaaaaaagggaaatgccaaaagccaaacagcgattaatatcaagttc
aagacccaagataatggagtgttgatgtttgttgttggacagagaggatccactttgcta
atgataaaagacagaaagcctgtgtacatttccaaatatacactgtccggacgcctgtca
gagttcactgtggattctcccgtgactgacggagtgtggcatgtcctctccttggtcagc
aatggacagaacacctttctgcttctggatggtaaagcagccttgaacatatccgagcaa
agtatggatctcactcctgctagtgtggaaaagattatttttggtgcagctgtgactgat
tcaaatctccaacagtcaggctttactggatgtgtgcaatatttcaatgtgaccggttac
actctgcctgtcactggacacagtgagatggtggacgtctggcctagttcgactcttgtc
cagtcgagctgcagttccgtggatgactgctttccctcgccctgctctgaggaggccaga
agaggtccaaaccggtggaggtgtggacccactgtgcaaaacaggtcctgcatctgttta
cataacgtgtctgaccacacctgtgatatctgcatctctgacaaagagagtcatgatcaa
tgctctgaggagcgggagcagggcagtttgcctctgtggctcatagctgtggttctccct
gtaatctccatcctggtgtttataggaatgtgtgttgtcctttacagagtgaggcggaag
aatgcaaagcatcgaagtgataatgtgccacagaaaacagagcaagggacagacaatgtg
ctgttttgctttaatgacaacctaactctgacaggtgctgcatctgcaggaaaacagaca
caacatgacccaatgagtgctgatcagcagagattaagtgtggagttttactgtgatgcc
agtctgtcaaatgttgagccagtgccaaacagtgagctggactattatgaaatcggcagc
atctctagtgcatttcattcagacactgcctcactgcagctcagctggaccaaacatttg
tacagcgcaaagtgtgtgaaatcagaacctaaacggtgggcagacttgaggatgttgatg
gctggatttaagaaagatagttccagtgaagagaaggcaaaaagtcctatgaagcctctg
gataagcagttgttaactgagactgatgcggaggagccttgttacaggaaggtgttcctg
gagcctgtgcaatacctcacttttgaagaaatcaggaaaattaccactccaccggagcaa
aaaatgtcacatcgagcatctctaaggtccagacctgccaagtgcatcacggtgatcgat
gtctcatctgacagtgaaacagacagcacattcactggcgtggagtctgagtgtggacag
ttttctctcatcagagccaggaaatatatccaagaccaatcatccctgtcagggtgcagc
ttcaaacaacaacgcattttgcctgtcagcttattcttaaatcacacctgtcagcctgct
gcaggtcggcacaaagctgagagttctccatccggtgtgtttgagcagtgggagaatatt
ttaagtatgcacctgcctttcagccgctatgctcctgtgtttgaggatattgcaaatctg
cccagtcaacccaatcacagctacgatatgcaaagtgacatagaggcaattatttaa
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integrated database retrieval system
