KEGG   Larimichthys crocea (large yellow croaker): 109142924
Entry
109142924         CDS       T04659                                 
Name
(RefSeq) DNA repair endonuclease XPF
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
lco  Larimichthys crocea (large yellow croaker)
Pathway
lco03420  Nucleotide excision repair
lco03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:lco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    109142924
   03460 Fanconi anemia pathway
    109142924
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lco03032]
    109142924
   03400 DNA repair and recombination proteins [BR:lco03400]
    109142924
DNA replication proteins [BR:lco03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    109142924
DNA repair and recombination proteins [BR:lco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     109142924
SSDB
Motif
Pfam: ERCC4 HHH_5
Other DBs
NCBI-GeneID: 109142924
NCBI-ProteinID: XP_027144969
LinkDB
Position
XVI:complement(11473269..11480117)
AA seq 896 aa
MAGPLLEFETEMFLSLFGSDGLLVAAEGMGIDRILLQFMRVYSEEGSLVLLLNTTTPEQE
YFTEQLRMEGVTHLPRTVTSDVQSAERYNVYTQGGVLFVTSRILVVDFLTDRIPAHLISG
ILVYRAHKIIESCQEAFILRLFRQKNKTGFIKAFTDKAAAFSSGFCQVERVMRNLFVKKL
YLWPRFQASVNTALDRHKPEVVELHVSLTPAMRAIQSSILDIMSACLKELKRYNPTLEAE
DLSLENTLGRSFDKTIRHYLDPLWHQLGAKTKGLVQDLKVLRVLLLYLTQYDCVTFLNLL
ESLRSSQKIFGSNSGWLFLDSSTSMFMNARARVYRIPESKKKLKVGAEAEKQKSSSVLEL
KRELVLEKSPKWEALTEVLQEIERENKSSQHEPGGVLICASDDRTCAQLQQCIRHSSEWM
LNRLYARTIGKRDSAAAAAFELDAHKKGKGWPQKGAKGKEPAQKKNTKSTKSKKRPSLTL
TQMVGKEETDEAVVMGSTGDEDELMGEEEEELKLDLSSDAYYGVLKEPLIVIHPLKGLTD
PHSLTRVLHEVEPSYVVLYDAELSFVRQLEIYKASRPGKTLRVYFLIYGGSTEEQKYLTA
LSKEKKAFEHLIREKATMVIPEEREGREDTNLDLARNLEPANATTNTRKAGGQEQPKEPS
RVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSVSDLIGSLQSGRLY
TQCLSMTRYYKKPVLLIEFDPAKPFSLMARTDFRHEISSNDISSKLTLLTLHFPRLRILW
CPSPHATADLFLDLKQGRAEPDAAAAQAVTAESDTVAESADLYNPGPYDFLLKMPGVNTK
NYRALIKNADSLADLAKLSQEKLAEILGNSNNAKLLYEFLHNVTNIPVPAQRTKQT
NT seq 2691 nt   +upstreamnt  +downstreamnt
atggcgggcccgctgctggagttcgagacggagatgtttctgagtcttttcggctctgac
gggctgctggtggcggcggaggggatgggcatagaccgcatactgctgcagttcatgcgg
gtttactcggaggagggaagcctggtacttctgctcaacacaaccacacctgaacaggag
tatttcacggagcagttgagaatggagggtgtgacccaccttcccaggacggtcaccagc
gacgtccagagcgctgagcgctacaatgtttacacacagggtggagtgctgttcgtcacc
agcaggatcctcgtggtcgacttccttacggaccgcatccccgctcatcttatatcaggc
atcctggtgtatcgtgctcataaaatcattgagtcatgtcaggaagccttcatccttcgt
ctcttcagacaaaagaacaagacaggcttcattaaagctttcactgacaaggccgcagcc
ttctcctccggcttctgccaggtggagcgtgtgatgaggaacctcttcgttaagaagctc
tacctgtggcccaggtttcaagcatccgtaaacacagcactggacaggcacaagccggag
gtggtggagctccatgtgtcattgacgccggcgatgagagccatccagagctccatcctg
gatatcatgagcgcctgtctaaaggagctgaaacgttacaaccccaccctcgaggccgag
gacctctccctggagaacacgctaggcaggtccttcgacaagaccatccgtcactacctg
gaccccttgtggcaccagctgggagcaaagaccaaaggcctagtccaggacctgaaagtg
ctgagggttctcctgctgtacctcacccagtacgactgtgtgactttcctcaatctgctc
gagtcgctgcgctccagccaaaagatctttggatccaattcagggtggttgttcctcgac
tccagtacctccatgtttatgaatgccagagctagagtttaccgcatccccgagagcaag
aagaaactcaaagtgggagcagaggcagagaaacagaagtcatcctctgtcttagagttg
aagcgggaactggtgctggagaagagcccgaagtgggaggctctgactgaggtactgcag
gagattgaaagggagaacaagagctctcaacatgaaccaggtggtgtgctcatctgtgcc
agtgatgacaggacctgtgcccagctgcagcagtgcatccgacacagctctgaatggatg
ctcaaccgtctgtacgcccgcacgatcggtaaacgggactccgctgcggccgctgccttt
gaactcgatgcgcacaaaaagggcaaaggctggcctcagaaaggagccaaggggaaggag
cctgcgcagaaaaaaaacacaaagtccacgaagagtaagaaaaggccgtccctgaccttg
acccagatggtagggaaagaggagacagatgaagcagtggtgatgggcagcaccggagac
gaggatgaactgatgggggaggaggaagaagagctgaagctggatttgtcatccgacgcc
tactatggtgtcctaaaggaaccactcattgtcattcacccactgaagggcctcactgat
ccccacagcctgacgcgggtgctgcacgaggtggagcccagttacgtggtgctgtacgac
gctgagctcagtttcgttcgccagcttgaaatctacaaagctagccggcctggaaaaaca
ctgagggtttatttcctcatctacggaggctcgacagaagaacagaagtacctgacggct
ctgtctaaggaaaagaaagcctttgaacacctgatcagggaaaaggctactatggtcatc
ccagaggagagggaagggcgagaagacaccaaccttgaccttgcaagaaatttggagcct
gccaatgccaccaccaacacccgcaaagcaggaggccaggagcagcccaaagagccctca
cgggtcattgtggacatgcgtgagttccgcagtgagctgccctccttgctgcaccgccgc
gggctcgacatcgaacccgtcaccttagaagtcggtgattacatcctgaccccggacaca
tgtgtagagcgcaagagcgtcagtgatctgattggctcattgcagagcggccgcctctac
acccagtgtctgtccatgacccgctactacaaaaaaccagtgctcctcattgagtttgac
ccagcaaaaccgttttccttaatggcccgaacggatttccgccatgagatatcatctaat
gatatttcctcaaaactcaccttactcaccttgcatttccctcggctccgtatactctgg
tgcccctccccgcacgccacagctgacctcttcctagatctaaagcaaggtcgcgccgaa
ccagatgctgcagcagctcaggcagtcacagccgagtcggacacggtggctgaatcggca
gatctctacaaccccggaccttacgacttcctgttaaaaatgcctggggtcaatacaaaa
aactacagggctcttataaaaaatgcagacagcctggcagatttagccaaactcagccaa
gaaaagctcgcagaaatactcgggaattctaacaacgctaaattgctgtatgagtttctg
cataatgtcacaaacattcctgttcctgcacagaggaccaaacagacatga

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