Lysobacter capsici: LC55x_0100
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Entry
LC55x_0100 CDS
T04162
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LC55x_0100 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_0100 (recC)
Enzymes [BR:
lcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LC55x_0100 (recC)
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LC55x_0100 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ALN83405
LinkDB
All DBs
Position
95435..98851
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AA seq
1138 aa
AA seq
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MPARPDFRLYHSNALDVLAGLLAQELRTPAPGQALLTPDTILIPQVAMRRWLQATLAQAY
GIAANLEFLTPGEFVQRALDANEPDIDPAERGDDLDAAAMRWRLYGVLSQPAQLREPALA
PLRAYLDGDDPIKSWSLSGELASLFEKYQAWRRDWLLAWDAGRDRNDAQAALWRRIAAGR
RYRARRIDDYLSRFNDDGGEHSPARIPRGLPSRLFAFATLNVSPDVLRVIATQAIAGTLH
FYLPTPTRKYWGDLGTLAERLRQGEDAAFGEDDNPLLQAWGTAGRDFMAVLGGYEVVHPS
GEIAAYADPEDSHHDDPSRDTLLQRLQRDLLHRRALPATPWRAQVDRLDASVQVHACHTR
LREVQVLHDQLQGLLDPQSEQGRRFDPPLQPREIAVLAPDIDPYAPHIAAVFGGLAGRPG
FIPYALADVSPLAAEPLAEVFLRLLALPVSRFGLSEVLDLLATPAIADQAGLDAAGLERL
RLWLGQAGARWGIDAAHRSRHDAPGDDAYTWAFALDRLLIGHAAGDGEAADSLVAGIAPY
AELEGASLDALDALIRLLRVLARFERGLAGDLTPAQWADRLLGLLRALLPERPRDHADQR
TLERLRSLIERFASDAEHADFNASVPPEVVRAHFRATLAEADTRAPLLTGGVSFGRMVPM
RLIPFRVICLLGMNDGDYPRRDPAGGMNRLAAELGTAARRHGDRSLRDDDRFLFLQLFAA
ASDAFYLSYLGADPRDGSQREPSTLVSELLDVAARYHVDPARARGEFVVREPLQPFAPAA
FGADPDGRGGEIDPRRFSYRSEWRPAADAGGYGPRMQLGPWLEDALPPMPADADQATLAY
QDLRAFLRDPPSAFLRQRLGLRLPDEVESGEDVEPLVLPGPGLMRQQLQRAVFDDLIAGD
GRIDRERLQASLRARALLPTGPLGRRQLDALLGQVRPYADAFARWRDGEGQALPFELDLG
GTQLRGRLDDVYAGGLARLRFDSLHGPSQIAHGLDWLVLSALGDPRPLAQFAHTGEGPGP
HLRNALSPREAKAALRALLRLRDYGLRMPLPFLPRAGWLWYEAAAQDPNAWNKAGWNKAE
AQWHGSARSWGEASSAAVRLALRGRDPFLDADSGEQFRDIAKLVFDAVVHGRDEGGPA
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcgcgtcccgatttccgtctctaccattccaatgcgctggacgtcctcgccggt
ctgctggcgcaggaactgcgcacgcccgcgcccgggcaggcgctgctgacccccgacacc
atcctgatcccgcaggtcgcgatgcgccgctggctgcaggcgacgctggcgcaggcgtac
gggatcgcggccaatctggaattcctgaccccgggcgaattcgtccagcgcgcgctcgac
gccaacgaacccgacatcgatccggccgagcgcggcgacgacctcgacgccgcggcgatg
cgctggcgcctgtacggcgtgctgtcgcagccggcgcagctgcgcgaaccggcgctggcg
ccgctgcgcgcgtacctggacggcgacgacccgatcaagtcgtggtcgctgtcgggcgaa
ctcgcctcgctgttcgagaagtaccaggcctggcgccgcgactggctgctggcctgggac
gccggccgcgaccgcaacgacgcccaggccgcgctgtggcgacgcatcgccgccggccgc
cgctaccgtgcgcggcgcatcgacgattacctgagccgcttcaacgacgacggcggcgag
cacagcccggcgcggatcccgcgcggcctgccgtcgcggctgttcgccttcgccaccctc
aatgtgtcccccgacgtgctgcgggtgatcgcgacccaggcgatcgccggcaccctgcat
ttctatctgccgaccccgacgcgcaagtactggggcgacctgggcaccctggccgagcgc
ctgcgccagggcgaggacgccgcgttcggcgaggacgacaacccgctgctgcaggcctgg
ggcacggccgggcgcgacttcatggcggtgctcggcggctacgaggtggtgcatccctcc
ggcgagatcgccgcctacgccgatccggaagacagccaccacgacgacccctcgcgcgac
accctgctgcaacgcctgcaacgcgacctgctgcaccggcgcgcgctgccggcgacgccg
tggcgcgcgcaggtcgaccgcctcgacgcgagcgtgcaggtccacgcctgccacacccga
ttgcgcgaagtgcaggtgctgcacgatcagttgcagggcctgctcgacccgcagtccgaa
cagggccgccgcttcgacccgccgctgcagccgcgcgagatcgcggtgctcgcgcccgat
atcgacccgtacgcgccgcacatcgccgcggtgttcggcggcctagccgggcggccgggc
ttcatcccgtatgccctggccgacgtcagcccgctcgcggccgagccgctggccgaagtg
ttcctgcgcctgctcgcgttgccggtgtcgcgtttcggcctgagcgaagtgctggacctg
ctggcgacgccggcgatcgccgatcaggccgggctcgacgccgccggcctggaacggctg
cgcctgtggctgggccaggccggcgcgcgctggggcatcgacgcggcccatcgcagccgc
cacgacgcgccgggcgacgacgcctacacctgggcattcgcgctcgatcgcctgctgatc
ggccacgccgccggcgacggcgaggccgccgacagcctggtcgccgggatcgcgccgtac
gccgagctcgaaggcgcgtcgctggacgcgctggatgcgttgatccgtttgctgcgcgtg
cttgcgcgcttcgaacgcggcctggccggcgacctcacgccggcgcaatgggccgaccgc
ctgctcggcctgctgcgcgcactgctgccggagcgtccgcgcgaccacgccgaccaacgc
accctcgaacgcctgcgcagcctgatcgaacgtttcgccagcgacgccgagcacgccgac
ttcaacgccagcgtgccgccggaagtggtgcgtgcgcatttccgcgcgaccctggccgaa
gccgacacccgcgcgccgctgctgaccggcggggtcagcttcggccggatggtgccgatg
cggctgattccgttccgggtgatctgcctgctcggcatgaacgacggcgattacccgcgt
cgcgacccggccggcggcatgaatcggctcgccgccgaactgggcaccgccgcgcgccgc
cacggcgaccgctcgctgcgcgacgacgaccgcttcttgttcctgcaattgttcgccgcc
gcgtccgacgcgttttatctgagttatctgggcgccgatccgcgcgacggcagtcagcgc
gaaccctcgaccttggtgtcggaattgctggatgtcgccgcgcgttatcacgtcgacccg
gcgcgcgcgcgcggcgagttcgtggtgcgcgaaccgctgcagccgttcgcgccggccgcg
ttcggcgccgatcccgacggccgcggcggcgagatcgacccgcgccgcttcagctatcgc
agcgaatggcgaccggccgccgatgccggcggttacggcccgcgcatgcaactcgggcca
tggctggaggatgcgttgccgccgatgccggccgacgcggatcaggccacgctcgcctat
caggacctgcgcgccttcctgcgcgatccgccgagcgcattcctgcgccagcgcctgggc
ctgcgcctgcccgacgaagtcgagagcggcgaagacgtcgaaccgctggtgttgcccggc
ccgggcctgatgcgccagcaattgcaacgcgcggtgttcgacgatctgatcgccggcgac
ggccggatcgatcgcgaacgcctgcaggcgagtctgcgcgcgcgcgcgctgttgccgacc
ggtccgttgggacggcgccagctcgatgccttgctcggtcaggtacgtccgtacgcggac
gcgttcgcgcgctggcgcgacggtgaaggccaggcgctgccgttcgaactcgatctgggt
ggcacccaactgcgcggccggctcgacgatgtgtatgccggcggcctggcgcggctgcgt
ttcgacagtctgcacggcccctcgcagatcgcgcatgggttggactggctggtgctgtcg
gcgctcggcgatccgcgtccgctggcgcagttcgcccacaccggcgaagggcccggcccg
catctgcgcaatgcgctgtcgccgcgcgaggccaaggccgcgttgcgcgcgctgctgcgt
ctgcgcgactacggcctgcgcatgccgctgccgttcctgccgcgcgcgggttggctgtgg
tacgaagccgcggcgcaggacccgaacgcctggaacaaggccggctggaacaaggccgaa
gcgcaatggcacggcagcgcgcgcagctggggcgaggcgagttcggccgcggtgcggctg
gcgctgcgcgggcgcgatccgtttctcgatgccgattcgggcgaacaattccgcgacatc
gccaagctggtgttcgacgcggtcgtgcacggccgcgacgaaggcgggccggcatga
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