Lysobacter capsici: LC55x_0101
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Entry
LC55x_0101 CDS
T04162
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LC55x_0101 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_0101 (recB)
Enzymes [BR:
lcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LC55x_0101 (recB)
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LC55x_0101 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
LRRCT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALN83406
LinkDB
All DBs
Position
98848..102453
Genome browser
AA seq
1201 aa
AA seq
DB search
MSAVRDPFLDLPLDGLRLIEASAGTGKTYTLATLVTRLVIERGLRIGDILAVTFTDAATQ
ELRERLRRRLLLAARIAADDPALIAAEDDGERAITRELVRAQAEHEGAAALRSRLQRAAR
EIDLAAVVTIHGFCARVLAEHALETGQPFAAPEMIGSERELIDEIAVDLWRAFGNDAGQA
ELLSLQWPAGPRALASDLGALMRAPVLLPSAPEPSPDPLPALQDAAESLRLAYEQHGAQA
FDAIEAAMAAKVLNGQTWRATLPGQLRQALDRWCANGDPVEPIEPRIDRLTPAVLAEKTN
KGKQAQTPSSPLFVAVERYLDVAAQRAQWLARQALRLVHDIRDAGRVRLAELKRVRRVQS
FDDLIADVALALDGPHGEALAQRLREQYAVALVDEFQDTDVRQWRIFERVFGEATVMESG
LGEPARAAGLFLIGDPKQAIYGFRGGDVHTYLSAAARAEAAPPLDHNFRSRPSVLRAISA
LYAQAGDTAFVDARIRFREVAPGGAVADADLQRDGAIAPALTIRRLPAPDDDRKKPEWSA
PESRDLAVRACVASIHAWLRDAREGRASIDGRALQPGDIAVLVRSHDEAARIQQALIAAG
IAAVAAGRRSLFATEQAIELLTVFDAVLHPGDGGRLRAALATVLIGLDGERIAALGLDEA
EQAVWQAQALVWRERWQRHGPLALVSDLCAEHAPRLLALADGERRLTNLLQLGETLQEAD
TRSLGLHGLRDWLHLRIAEADDSDEKQQLRLESDARRVQILTLHKSKGLEFALVFLPFVA
IGREPRGGRLCEYPDPLHGRVLQVQSEVFDPNAPDWDSARERAAIEARSEDARLLYVGLT
RARHALWLASGPLYLAQASPLQAMLADADALAHQHPDAIVIDDAPLEHPPAPLPPPAAGA
VPPARRARHSVPRDWWVYSFTQLTNEDDGAGQGALVADERGAEDEPDIAAAVLTPGDARY
SGSRFGNVVHTALERVDFGAWREWTADAPAPDGEAAWLASALRGEGYTDADIDDGLPLLT
SLVGLTLTAALPEGTRLCELPERERRSEMEFHFALESVPVDRLLATLHAHGWLRERQAFG
LRRRLEGLMTGKIDLVYAFEGRYYVLDYKTNRLPSYDAIQVDRAMGESEYTLQSLIYTVA
LHRWLRFRLGDAYDYARDFGGVRYLFCRGLDPADPDAGLYAHQPARELVDAVDALFAGGA
A
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgtgcgtgatccctttctcgacctgccgctggacggcctgcgcctgatcgag
gccagcgccggcaccggcaagacctatacgttggcgaccttggtcacccgtctggtgatc
gaacgcggcctgcgcatcggcgacatcctcgcggtgaccttcaccgacgcggccacccag
gaactgcgcgagcgtttgcgccgtcgcctgctgctggccgcgcgcatcgccgccgacgat
ccggccctgatcgcggccgaagacgacggcgaacgcgcgatcacccgcgaactggtgcgc
gcgcaagccgagcatgaaggcgccgcggccttgcgctcgcgcctgcaacgcgccgcgcgc
gagatcgatctggccgcggtggtcaccatccacggcttctgcgcgcgcgtgctcgccgaa
cacgccttggaaaccggccagccgttcgccgcgccggagatgatcggtagcgagcgcgaa
ctgatcgacgagatcgcggtcgacctgtggcgcgcgttcggcaacgatgccggtcaggcc
gagctgctgtcgctgcaatggcccgccgggccgcgcgcattggcatcggacctgggcgcg
ttgatgcgcgcgccggtgttgctgccgtcggcgccggagccatcgcccgatccgttgccg
gccttgcaggacgcggccgaatcgctgcggctggcctacgaacagcatggcgcgcaggcg
ttcgacgcgatcgaagcggcgatggcggccaaagtcctcaacggacagacctggcgcgcg
accctgcccggacaactgcgccaggcgctggatcgctggtgcgcgaacggcgatccggtc
gaaccgatcgagccgcgcatcgatcgactgaccccggcggtactcgcggaaaagaccaac
aagggcaagcaggcgcagacgccgtcgtcgccgttgttcgtcgcggtcgagcgctatctc
gatgtcgccgcgcagcgcgcgcaatggctggcgcggcaggcattgcgtctggtccacgat
atccgcgacgccggacgcgtgcgtctggccgaactcaagcgggtccggcgcgtgcagagc
ttcgacgacttgatcgccgatgtcgcgctggcgctcgacgggccgcacggcgaggccttg
gcgcagcgtttgcgcgagcaatacgcggtggcgctggtcgacgagttccaggacaccgat
gtgcgccagtggcggatcttcgaacgcgtgttcggcgaagccacagtgatggaatcgggc
ctgggcgaacccgcgcgggccgccggcctgttcctgatcggcgatccgaagcaggcgatc
tacggcttccgcggcggcgacgttcacacctatctgtcggcggcggcgcgggccgaagcc
gcgccgccgctggatcacaatttccgttcgcggcccagtgtgctgcgcgcgatctcggcg
ctgtacgcgcaggccggcgacaccgccttcgtcgatgcccgcatccgctttcgcgaagtc
gcgcccggcggcgcggtcgccgatgccgatctgcaacgcgacggcgcgatcgcgccggcg
ttgacgatccggcgtctgccggcgcccgacgacgatcgcaagaaacccgaatggagcgcg
cccgaatcgcgcgacctggccgtgcgcgcctgcgtcgcgtcgatccacgcctggctgcgc
gatgcgcgcgagggccgcgcgagcatcgacggccgcgcgctgcagccgggcgatatcgcg
gtgctggtgcgcagtcacgacgaagccgcgcgcatccagcaggcgctgatcgccgccggt
atcgccgcggtcgcggcggggcggcgcagcctgttcgcgaccgagcaggcgatcgaattg
ctgaccgtgttcgatgcggtgctgcatccgggcgacggcgggcgcttgcgcgcggcgttg
gcgacggtgttgatcgggttggatggggaacgcatcgctgcgctgggtctggatgaggcg
gagcaggcggtgtggcaagcgcaggccttggtttggcgcgagcggtggcagcggcacggg
ccattggcgttggtcagcgacttgtgcgccgaacacgcgccgcgcctgctcgcgctggcc
gatggcgaacgccgcctgaccaatctgctgcaactcggcgaaaccctgcaggaagccgac
acccgctcgctcggcttgcacggtctgcgcgactggctgcatctgcgcatcgccgaagcc
gacgacagcgacgaaaagcagcaactgcgtctggaatccgacgcgcgccgggtgcagatc
ctgaccctgcacaagagcaagggcctggagttcgccctggtgttcctgccgttcgtcgcg
atcggacgcgagccgcgcggcggccgtttgtgcgaataccccgacccgctgcacggtcgg
gtgctgcaggtgcaaagcgaggtgttcgatccgaacgcgccggattgggacagcgcgcgc
gaacgcgcggcgatagaggcgcgttcggaagacgcgcgcctgctctacgtcggcctgacc
cgcgcgcgccatgccttgtggctggcgagcgggccgttgtacctcgcgcaagcgtcgccg
ctgcaggcgatgctggccgatgccgacgcgctcgcgcatcaacatcccgacgcgatcgtc
atcgacgacgcgccgctcgaacacccgcccgcgccgctgccgccgcccgcggccggcgcg
gtgccgccggcgcgtcgcgcacgccacagcgtgccgcgcgactggtgggtctacagcttc
acccagttgaccaacgaggacgacggcgccggccagggcgcgctggtcgccgacgagcgc
ggcgccgaagacgagcccgacatcgccgcggccgtgctgacgcccggcgacgcgcgctac
tccggcagccgcttcggcaacgtggtccacaccgcgctggagcgcgtggatttcggcgcg
tggcgcgaatggaccgccgacgcgcccgcgcccgacggcgaagccgcgtggctcgcgtcg
gcgttgcgcggcgagggctacaccgatgccgatatcgacgacggtctgccgctgctgacc
tcgctggtcggcctgacgctcaccgcggcgctgccggaaggcacgcgcctgtgcgaactg
cccgagcgcgagcggcgcagcgagatggagttccatttcgccctggagtcggtgccggtc
gatcgcttgctggcgaccctgcacgcgcacggctggctgcgcgaacgtcaggccttcggc
ctgcgtcgccgcctggaaggcctgatgaccggcaagatcgatctggtctacgccttcgaa
ggccgctactacgtgctcgattacaaaaccaaccgcctgccgtcctacgatgcgatccag
gtcgaccgggcgatgggcgaaagcgagtacaccctgcaatcgctgatctacaccgtcgcc
ctgcaccgctggctgcgtttccgcctcggcgacgcgtacgactacgcgcgcgatttcggt
ggcgtgcgttatctgttctgccgcggcctcgacccggccgaccccgatgccggtctgtac
gcgcatcaacccgcgcgcgaactggtcgacgcggtcgatgcgctgttcgccggaggcgcg
gcatga
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