Lysobacter capsici: LC55x_0102
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Entry
LC55x_0102 CDS
T04162
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LC55x_0102 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_0102 (recD)
Enzymes [BR:
lcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LC55x_0102 (recD)
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LC55x_0102 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
Viral_helicase1
AAA_11
UvrD-helicase
Helicase_RecD
SH3_13
UvrD_C
AAA_22
T2SSE
DEAD
NTPase_1
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ALN83407
LinkDB
All DBs
Position
102450..104297
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AA seq
615 aa
AA seq
DB search
MSLLEALHREGSLRTVDHAFAQALRRLDRDTPDAVLAAAALASQAIARGHAAFDPRSPQW
LSEATTDWPDPEQWLALLADSRWVATPAPGIAASAHAPLVLERGLLYLRRYREYERRLAD
GLRRIAAFAPPPTDLAALAPLFALLFPNARDDDRQARAAALALLQSLLLATGGPGTGKTT
TIARVLLLLIAQARLDGVSAPRIALAAPTGRAAERMAESLRAAALRLSALDGIDPSLCEA
LPTQASTLHRLLGSVPDSPRFRHDARNPLAFDVIVVDEASMVDLPLMCKLVEAVPAGARL
ILLGDRDQLPSVEAGDVLAAIVDAAGDDDGLPATLAQSLRPLLGEIAIQADPAPLSAYRV
HLRRGYRQAESLELAPLAEATRAGDADTVLALLRGGELAGVQFHEDVHDPLAGAGRDWLL
PAWRALAAIEDPLEALQAAARLRLLTALRDGGQGAAPLNARIEEALAGAHRPAYFHGRLL
LITENSYRHGLFNGDIGICLRPRDADGRELANAATVAWFAGGSEGVRPFHPSALPAHSGA
FAMTVHKAQGSEFDAVWLQLPRQDARHLSRELLYTGMTRARRELHIAGSEAVLRLALSRH
AARVSGLSWRLAEER
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctggaagccctgcatcgcgaaggcagtctgcgcacggtcgaccatgcgttc
gcccaggccttgcgccggctcgatcgcgacacgcccgacgcggtgctcgcggccgccgcg
ctggcttcgcaggcgatcgcgcgcgggcatgccgcgttcgatccgcgcagcccgcagtgg
ctcagcgaagcgaccaccgactggcccgatccggagcagtggctcgcgctgctggccgat
tcgcgctgggtcgccacgcccgcgcccggcatcgccgcgagcgcgcatgcgccgttggtg
ctggagcgcggcttgctgtatctgcgccgctatcgcgaatacgaacgccgcctcgccgac
ggcctgcgccggatcgccgcgttcgcgccgccgccgaccgatctggccgcgctggcgccg
ctgttcgccctcctgtttccgaacgcgcgcgacgacgatcgccaggcgcgcgcggccgcc
ttggccttgctgcagtcgctgctgctcgccaccggcggccccggcaccggcaagaccacc
acgatcgcgcgggtgctgctgctgttgatcgcgcaggcgcgtctcgatggcgtcagcgcg
ccgcgcatcgccctggccgcgccgaccggccgcgccgccgaacgcatggccgagagcctg
cgcgcggccgcgttgcgattgagcgcgctcgacggcatcgacccgagcctgtgcgaggcc
ttgccgactcaggccagcaccttgcatcgcctgctcggcagcgtgcccgacagcccgcgc
ttccgtcacgacgcgcgcaatccgctcgcgttcgacgtgatcgtggtcgacgaagcctcg
atggtcgacctgccgctgatgtgcaaactggtcgaggcggtgccggccggcgcgcgcctg
atcctgctgggcgaccgcgatcaactgccgtcggtggaagcgggcgacgtgctcgccgcg
atcgtcgatgcggccggcgacgacgacggtctgcctgcgacgttggcgcaatccttgcgg
ccgctgcttggcgagatcgcgatccaggccgacccggcgccgctgagcgcctaccgcgtg
catctgcgtcgcggctaccgccaggccgaaagcctggaactggcgccgctcgccgaggcc
acccgcgccggcgacgccgacaccgtgctcgcgttgctgcgcggcggcgaattggccggc
gtgcagttccacgaagacgtgcacgaccccttggccggcgccggtcgcgactggttgttg
ccggcctggcgcgcgctggccgcgatcgaggatccgctcgaagcgctgcaggccgccgcg
cggctgcgcctgctgaccgcgttgcgcgacggcggccagggcgcggcgccgttgaacgcg
cgcatcgaggaagcgctggccggcgcgcaccggccggcgtatttccacggccgcctgttg
ctgatcaccgaaaacagttatcgccacggcctgttcaacggcgacatcggcatctgcctg
cggccgcgcgacgccgacggccgcgaactggccaacgcggcgaccgtcgcctggttcgcc
ggcggcagcgaaggcgtgcggcccttccatccctcggccttgcccgcgcacagcggcgcg
ttcgcgatgaccgtgcacaaggcgcagggctcggagttcgacgcggtctggctgcaactg
ccgcgccaggacgcgcgccacctgtcgcgcgaactgctctacaccggcatgacccgcgcc
cgccgcgagctgcacatcgccggcagcgaagcggtgctgcggctggcgctgtcgcggcac
gcggcgcgggtgtcgggcttgtcgtggcggttggcggaggagcgatag
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