Lysobacter capsici: LC55x_1052
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Entry
LC55x_1052 CDS
T04162
Name
(GenBank) pcaR
KO
K02624
IclR family transcriptional regulator, pca regulon regulatory protein
Organism
lcp
Lysobacter capsici
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcp03000
]
LC55x_1052
Transcription factors [BR:
lcp03000
]
Prokaryotic type
Helix-turn-helix
IclR family
LC55x_1052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IclR_C
HTH_IclR
TrmB
DUF5817_CT
GAF_2
MarR_2
Rrf2
HTH_5
HTH_9
Motif
Other DBs
NCBI-ProteinID:
ALN84344
LinkDB
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Position
complement(1175222..1176100)
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AA seq
292 aa
AA seq
DB search
MQKERRKSASSAGATARGPKPSAPPMGSSAVRRIIETIEQCEGDPDFMTSFARGLAVLRA
FTGHTRVLSVSQISLQIGIPRAAVRRALYTMLRLGYVSETDGGYCLQPRVLGIGNAYLSS
ATLAQMAQPVLDALRDRVQESCSLGVLDEDEALYVARAQTVRIISVGLHPGSRIPAYCSS
LGRMLLAHLPEAELETYLARVAMRPRTDRTVVERARLRTLLEKARRSGYCIVDQELELGL
RSVAVPVRSAKDEVVAAINIGTSSAQATLRKLETELLPQLRVAAMQLESLLQ
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaagaacgcagaaaatccgcatcaagcgccggcgcgacggctcgcggtccaaag
ccgtccgcgccgccgatgggctccagcgcggtgcgtcgcatcatcgaaaccatcgagcaa
tgcgagggcgatcccgacttcatgacttcgttcgcgcgcgggctcgcggtgctgcgcgcg
ttcaccggccacacccgcgtgctgagcgtgtcgcagatcagcctgcagatcggcattccg
cgcgcggcggtgcggcgcgcgctgtacacgatgctgcggctgggctacgtgtcggagacc
gacggcggctattgcctgcagccgcgcgtgctcggcatcggcaacgcctacctgtcgtcg
gcgacgctggcgcagatggcgcaaccggtgctcgacgcattgcgcgaccgggtacaggaa
tcgtgttcgctcggcgtgctcgacgaagacgaggcgctgtacgtcgcgcgcgcgcagacc
gtgcggatcatttcggtcggcctgcatccgggcagccggattccggcctattgctcgtcg
ctgggacggatgttgctggcgcacctgcccgaggccgagctggaaacttatctggcgcgc
gtggcgatgcggccgcgcaccgaccgcaccgtggtcgaacgcgcgcgcctgcgcaccttg
ctggagaaagcgcggcgcagcggctactgcatcgtcgaccaggaactggaactgggcctg
cgttcggtcgcggtaccggtacgttcggccaaggacgaagtcgtcgccgcgatcaacatc
ggcacctcctccgcgcaggcgacgctgcgcaagctggaaaccgaattgctgccgcaactg
cgggtcgcggcgatgcagctggaatcgctgctgcagtag
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