Lysobacter capsici: LC55x_1106
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Entry
LC55x_1106 CDS
T04162
Name
(GenBank) RNA 2'-O ribose methyltransferase substrate binding family protein
KO
K03214
RNA methyltransferase, TrmH family [EC:2.1.1.-]
Organism
lcp
Lysobacter capsici
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcp03009
]
LC55x_1106
03016 Transfer RNA biogenesis [BR:
lcp03016
]
LC55x_1106
Ribosome biogenesis [BR:
lcp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LC55x_1106
Transfer RNA biogenesis [BR:
lcp03016
]
Prokaryotic type
tRNA modification factors
Methyltransferases
LC55x_1106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
SpoU_sub_bind
Motif
Other DBs
NCBI-ProteinID:
ALN84398
UniProt:
A0A0S2FLG3
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All DBs
Position
1237661..1238902
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AA seq
413 aa
AA seq
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MQRDDPPRGPRKPYSGHGPRKDTGAGTGQGAGQGAGQGPWRSGPRRDDEQRPPRQGAAPP
RAPDASGPYRAAPRPPAGDSPYRNSGERRAREPAAVDPAAVPHRSGHAHPHDRSERRDQR
HRHGDDTREPHARERSERHARAERPYRERDDEIDGGPGEDDFGSPSPQRARRDAELRLYG
LNAIRAVFARRPQAIRKLYLDSNRIPQLQPLLAWCVANRVGYRVVEQTDLDKLAASSHHE
GVVADVLREEPVSLSEWLRELAPGPQLAIWLDGVGNPHNLGAILRSAAHFGVSAVLLPKD
GSLALSGAAARVAEGGAEVVPMVRMGRSDNALAQLRGSGFSLAATVVSGGDDVFAASLPE
RLIYVLGAEGEGMDRDLAAACDRRLSIPGSGKVESLNVAAATAVLLAAWRARR
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgtgacgatccgccgcgcggtccgcgcaagccttacagcggccacggcccgcgc
aaagacaccggtgccggcacgggccagggcgcaggacagggtgcgggccaaggcccgtgg
cgcagcggtccgcgccgcgacgacgagcagcggccgccgcgtcagggcgccgcgccgccg
cgcgcgcccgatgcgtccggcccgtatcgcgccgcgccgcgtccgccggccggcgacagc
ccgtaccgcaacagcggcgaacgccgtgcgcgcgagcccgcggccgtggatccggcggcg
gtgccgcatcgcagcggccacgcccatccgcacgatcgctccgagcgccgcgaccagcgc
catcgccacggcgacgacactcgcgaaccgcacgcgcgcgaacgcagcgaacggcatgcg
cgcgccgagcggccgtatcgcgaacgcgacgacgagatcgacggcggtccgggcgaggac
gatttcggatcgccttcgccgcagcgcgcgcgccgcgacgccgagctgcgtctgtatggg
ctcaatgcgatccgcgcggtgttcgcgcgccggccgcaggcgatccgcaagctgtatctg
gattcgaaccggatcccgcagctgcagccgctgctggcctggtgcgtggccaatcgggtc
ggctaccgggtggtcgagcagaccgacctggacaagctcgccgcgagtagccatcacgaa
ggcgtggtcgccgacgtgctgcgcgaggaaccggtgtcgctgtcggaatggctgcgcgaa
ctcgcgcctggtccgcaactggcgatctggctcgacggcgtcggcaatccgcacaacctc
ggcgcgatcctgcgttcggccgcgcatttcggcgtgagcgcggtgctgttgcccaaggac
ggatcgctggccttgtcgggcgcggccgcgcgcgtggccgagggcggcgccgaggtcgtg
ccgatggtgcgcatgggccgcagcgacaacgccttggcgcaattgcgcggctcgggtttc
agcctggccgcgaccgtggtcagcggcggcgacgacgtgttcgccgcgtccttgcccgag
cgtctgatctatgtgctcggcgccgaaggcgagggcatggaccgcgacctggccgcggcc
tgcgaccggcgtttgtcgattcccggcagcggcaaggttgaaagcctcaacgtcgccgcg
gcgacggcggtgctgctggccgcatggcgcgcgcggcgttga
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