Lysobacter capsici: LC55x_1516
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Entry
LC55x_1516 CDS
T04162
Name
(GenBank) pectate lyase family protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lcp
Lysobacter capsici
Pathway
lcp00040
Pentose and glucuronate interconversions
lcp01100
Metabolic pathways
lcp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
LC55x_1516
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LC55x_1516
Enzymes [BR:
lcp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
LC55x_1516
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
ALN84808
LinkDB
All DBs
Position
complement(1713743..1715425)
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AA seq
560 aa
AA seq
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MNSATARRPSASIPKINRPRVSRAVTGVPMQTVASRRSLQIARAVVSAPSPRLHHQAQQR
RRRGRCLIATLILAVASLMPAAAAGISMYNIEGYAAASVTGGGYIAETDARYRRVTTPAG
FIAALRAARTSSSAPVKVIEIANDLDMGWNEVDDVARADGLLRQNKAPKKHPSLIASGVS
LLDVTNFNGLTIYSRNGSTLRHVELNIKSGTNLVLRNLRFDELWEWDEGTRGDYDSNDWD
FVTLGDGGGVTSGIWIDHCSFSKAYDGVVDIKKGANNITVSWIETVPPPSGPGSFVARQF
DYLEANRSANAMYDFLRGFFTRQQIVDISLPQKKGHLIGSNDLEGLSSYTVTLHHNHYRD
LQDRMPRLRGGDVHAYNLYVDSSNARIMKATRDAVVQANPALRSKVEGSSPTYKFDVILN
GSVSTEGGAVQVERSLFWGVLTPLRNNQTDPNDSRYTGAIRAFGVRHVLFASDTQYMPVS
SQQATFLDRGIVWASWEGDSGAAGSTLGPAQAAQVPFVWRNGVPSYPMTMHRIDELGALR
ASMGAGKLSMSAEQWMRVVN
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcgcgacggcacgccggccctctgcttcgatcccgaagatcaaccgaccgcgc
gtgtcgcgcgcggtcactggagtccctatgcaaaccgtcgccagccgtcgttcgctacag
atcgcgcgcgccgtcgtttcagcgccctcgccgcgcttgcaccaccaagcccagcagcgg
cgccgccgcggccgatgcctgatcgcgacgctgatcctcgccgtcgcaagcctcatgccg
gccgcggccgcgggcatttcgatgtacaacatcgaaggctatgcggcggccagcgtcacc
ggcggcggctatatcgccgaaaccgacgccaggtaccggcgggtgaccacgccggccggg
ttcatcgccgcgctgcgcgccgcgcgcacgtcgagttccgctccggtcaaggtcatcgag
atcgccaacgacctcgacatgggctggaacgaagtcgacgacgtggcccgcgccgatggg
ctgctgcgccagaacaaggcgcccaagaagcacccgtcgctgatcgcgagcggcgtatcc
ctgctcgatgtgaccaacttcaacgggctgacgatttattccaggaacggatccaccctg
cgccatgtcgagctgaacatcaaaagcggaaccaatctggtcctgcgcaatcttcgtttc
gacgagctgtgggaatgggacgagggaacccgcggcgattacgacagcaacgactgggat
ttcgtcaccctcggcgacggcggcggcgtgacctcgggcatctggatcgaccattgcagt
ttcagcaaagcctacgacggcgtggtcgacatcaagaagggcgcgaacaacatcaccgtg
tcgtggatcgaaaccgttcctccgcccagcgggccgggcagcttcgtggcgcgccagttc
gattacctcgaagccaatcgctcggccaatgcgatgtacgacttcctgcgcggcttcttc
accaggcagcagatcgtcgacatctcgctgccgcagaagaagggacacctgatcggctcc
aacgatctggaagggctttcgtcctatacggtgaccctgcatcacaaccactatcgcgac
ctgcaagaccgcatgccgcggttgcgcggcggcgacgtgcacgcctacaacctgtacgtc
gacagctccaatgcgcggatcatgaaggccacccgcgacgccgtcgtccaggccaatccg
gccctgcgttccaaggtcgagggcagttcgccgacttacaaattcgatgtgatattgaat
ggctcggtgtcgaccgaaggcggcgcggtccaggtcgagcgcagcctgttctggggtgtg
ctcaccccgctgaggaacaatcagaccgatcccaacgattcgcgttacaccggcgctatc
cgggccttcggcgtccgccatgtgctgtttgcgagcgacacccagtacatgccggtgtcg
tcgcagcaggcgacgttcctcgatcgcggcatcgtctgggccagttgggaaggagacagc
ggcgcggcgggaagcacgcttggcccggcgcaggcggcgcaggtcccgttcgtctggcgc
aatggcgtgccttcgtacccgatgacaatgcatcggatcgatgagctcggcgccttgcgt
gcctcgatgggcgccgggaagttgagcatgtccgcggagcaatggatgcgagtcgtcaac
taa
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