Lysobacter capsici: LC55x_1988
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Entry
LC55x_1988 CDS
T04162
Name
(GenBank) sigma-54 interaction domain protein
KO
K03696
ATP-dependent Clp protease ATP-binding subunit ClpC
Organism
lcp
Lysobacter capsici
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
lcp03110
]
LC55x_1988
Chaperones and folding catalysts [BR:
lcp03110
]
Heat shock proteins
HSP100
LC55x_1988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
ClpB_D2-small
AAA
AAA_5
AAA_22
PCRF
AAA_18
AAA_16
AAA_29
Zeta_toxin
T2SSE
Sigma54_activat
AAA_7
nSTAND_NTPase5
nSTAND3
RsgA_GTPase
NPHP3_N
ABC_tran
DUF815
TIP49
AAA_23
HerA_C
ATPase_2
NB-ARC
KAP_NTPase
AAA_25
NTPase_1
Mg_chelatase
ResIII
DAP3
Motif
Other DBs
NCBI-ProteinID:
ALN85266
LinkDB
All DBs
Position
complement(2186229..2189594)
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AA seq
1121 aa
AA seq
DB search
MEALLFVVGVVAGLILARLYRATPVAPAAIADASPQQVDSAADQADNSEAEAPIETSSAT
DETPADQLLRLIRAIDAVDERIQRPQDLLALPEFHQGVDLLASEAFSAEELVRQLGGTGY
VQQSMITRVLPRRGDIALAPVLEHAGQFGGYPLHFLIDYLRTRGDAQALPHLMRHAQPWW
WDFAPVRQQLRDYLQWAQQFGEAPVAPALDELEEAQASQLRDTLKRFASPLLDPLLAQVE
RAANARREGRVLGAFGRVNAAIKPQTRIVHDTLARQLERVHELLSNETTTSILVAGEHGV
GKSVLIDLLSQRLQSEGWLVFEASAAEILSGQSYIGELEERVREMLAVLDRKQALWRAPD
FFDLLAKGSHSRDPRGLLDLMLPAIERGQLRVIGEITPRQLAQLLIARPVVKHHFEILNL
APVEPLALEPIAAEWARIEAERLGRPVADARVLAEAARMASQYFPEQQEPGRLLRLLGDS
LQSASAQEPPALPLDAEGLLATIAQRSGLPLDVIDDRQSLDLDRLRAFFRQRVIGQDEAV
DALLDRIAMLKAGLTDNGRPIGVFLFAGPTGTGKTELAKALGELLFGSDERLLRLDMSEF
QSEDSAWRLTADEGGQGGVRSLTSRIREQPFSVVLLDEFEKAHPKVWDLFLQVFDDARLS
DRSGHTADFRHSIIILTSNVGSTISRTAGPGFNSVSGGYSRSAVEKALYETFRREFINRL
DRVVLFNPLDRNLMREILHKELGRVLTRRGLRNRDWAVEWEPSAIEFLLDRGFTPDLGAR
PLRRAIEHYLLAPLARSIVEHRAPRGDQFLFVRSAGDKLDVVFIDPDATQAREVTPTDEA
ASADTAAPAAAGDLRDLVYAPSADAEAIARLDARLRELDAAIESADWVRAREADYARMSE
SDFWSAGDRHGVLDRIERRDRIESALDTAQRMQQRLRQERGNGEFAGRIAQLLFLLGLAI
DAVREQRPQDALIQIDTGDADPLRSGADLRLWWQQLLAMYLAWAQRRNMRVDVLRQDPEH
CKAWLAVSGFGALDLLQGESGLHVFEELDDGVTRRASLSVQVAADLPGRARVAQAAPDGE
RRICRRYRESPSPLVRDGVRGWRSGRLDRVLAGEFDVIQGG
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
gtggaagccttgctattcgtcgtcggcgtggtcgccggtctgatcctcgcccgcctttat
cgggccacgccggtggccccggccgctattgccgatgcttctccgcagcaggtcgattca
gcggccgatcaagcggacaacagcgaagccgaagcgccgattgaaacctcttcggccacc
gacgaaacgcccgccgatcaactgctgcggttgatccgcgcgatcgacgcggtcgacgaa
cgcatccagcgcccgcaggacctgctggccctgcccgaattccatcagggcgtggacctg
ctcgccagcgaggccttcagcgccgaggaactggtccgccagctcggcggcaccggctac
gtgcagcaatcgatgatcacccgggtgctgccgcgacgcggcgacatcgcgctcgccccg
gtgctcgaacacgccggccagttcggcggctacccgctgcatttcctgatcgactacctg
cgcacccgcggcgacgcgcaggcgctgccgcatctgatgcggcacgcgcagccgtggtgg
tgggatttcgcgccggtgcgccagcaactgcgcgattacctgcaatgggcgcagcagttc
ggcgaggcgccggtcgcgccggcgctggacgaactcgaagaagcccaggccagccagctg
cgcgacactctcaagcgcttcgcctcgccgctgctcgatccgctgctggcgcaggtcgaa
cgcgccgccaacgcgcgccgcgaaggccgcgtgctcggcgcgttcggccgggtcaacgcg
gcgatcaagccgcagacgcggatcgtgcacgacaccttggcgcggcagctcgagcgcgtg
catgagttgttgagcaacgagaccacgacctcgatcctggtcgccggcgaacacggcgtc
ggcaagagcgtgctgatcgacctgctcagccagcgcctgcaaagcgaaggctggctggtg
ttcgaagccagcgccgcggaaatcctgtccgggcagagctacatcggcgaactcgaggag
cgcgtgcgcgaaatgctcgccgtgctcgatcgcaagcaggcgctgtggcgcgcgccggac
ttcttcgacctgctggccaagggctcgcactcgcgcgatccgcgcggtctgctcgacttg
atgctgccggcgatcgaacgcggccagttgcgggtgatcggcgaaatcaccccgcgccag
ctggcgcagttgctgatcgcgcggccggtggtcaagcaccatttcgaaatcctcaacctc
gccccggtcgaaccgctcgcgctggaaccgatcgcggccgaatgggcgcggatcgaagct
gaacgcctcggccgcccggtcgccgacgcgcgcgtgctggccgaggccgcgcgcatggcc
tcgcagtattttcccgaacaacaggaacccggccgcctgctgcgcctgctcggcgacagc
ctgcagagcgcgagcgcgcaagagccgccggccctgccgctggacgccgaaggcctgctg
gcgaccatcgcccagcgcagcggcctgccgctggacgtgatcgacgatcgccagagcctg
gacctggaccgtctgcgcgcattcttccgccagcgcgtgatcggccaggacgaagcggtc
gacgccctgctcgaccgcatcgccatgctcaaggccggcctgaccgacaacggccggccg
atcggcgtgttcctgttcgccggccccaccggcaccggtaagaccgagctggccaaggcg
ttgggcgaattgctgttcggcagcgacgaacgcctgctgcgcctggacatgagcgagttc
cagtccgaggactcggcctggcgcctgaccgccgacgaaggcggccaaggcggcgtgcgc
tcgctgacctcgcgcatccgcgagcaaccgttctcggtggtgctgctggacgaattcgaa
aaagcccatccgaaggtgtgggacctgttcctgcaggtgttcgacgacgcgcgcctgagc
gaccgcagcggccacaccgccgacttccgccacagcatcatcatcctgaccagcaacgtc
ggctcgaccatttcgcgcaccgccgggccgggcttcaactcggtcagcggcggctattcg
cgcagcgcggtcgagaaggcgctgtacgaaaccttccgccgcgaattcatcaatcgcctc
gaccgggtggtgttgttcaacccgctcgaccgcaacctgatgcgcgagatcctgcacaag
gaactcggccgcgtgctgacccggcgcggcctgcgcaatcgcgactgggcggtggaatgg
gaaccctcggcgatcgagttcctgctcgaccgcggcttcaccccggacctgggcgcgcgt
ccgctgcgccgcgcgatcgagcactacctgctcgcgccgctggcgcgcagcatcgtcgaa
caccgcgcgccgcgcggcgatcagttcctgttcgtgcgcagcgccggcgacaaactcgac
gtggtgttcatcgaccccgatgcgacgcaggcgcgcgaagtcacgccgaccgatgaagcc
gcaagtgccgatacagccgcgcccgcggcggccggcgacctgcgcgacctggtctacgcg
ccctcggccgacgccgaggcgatcgcgcgcctggacgcgcgcctgcgcgaactcgacgcg
gcgatcgaatcggccgattgggtgcgggcgcgcgaagccgattacgcgcgcatgagcgag
tccgacttctggtcggccggcgaccgtcacggcgtgctcgaccggatcgaacgccgcgac
cgcatcgaaagcgcgctcgacaccgctcagcgcatgcagcagcgcctgcgtcaggaacgc
ggcaacggcgagttcgccggccgcatcgcgcaactgctgttcctgctcgggctggcgatc
gacgcggtgcgcgagcaacgcccgcaggacgcgctgatccagatcgacaccggcgacgcc
gatccgctgcgttcgggcgccgacctgcgcctgtggtggcaacagttgctggcgatgtac
ctggcctgggcgcagcgccgcaacatgcgcgtcgacgtgctgcgccaggacccggaacac
tgcaaggcgtggctggcggtgagcggcttcggcgcgctggacctgctgcaaggcgaatcg
ggcctgcatgtgttcgaggaactcgacgacggcgtcacccgccgcgcctcgctgtcggtg
caggtcgccgccgacctgcccggccgcgcgcgcgtggcccaggccgcgccggacggcgaa
cgccggatctgccgtcgctaccgcgaatcgccgtcgccgttggtgcgcgacggcgtgcgc
ggctggcgcagcggccggctcgatcgcgtgctcgccggcgaattcgacgtgatccagggc
ggttga
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