Lysobacter capsici: LC55x_2041
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Entry
LC55x_2041 CDS
T04162
Symbol
pcnB
Name
(GenBank) poly(A) polymerase family protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC55x_2041 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcp03019
]
LC55x_2041 (pcnB)
Enzymes [BR:
lcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LC55x_2041 (pcnB)
Messenger RNA biogenesis [BR:
lcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LC55x_2041 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
RhlB
Motif
Other DBs
NCBI-ProteinID:
ALN85316
LinkDB
All DBs
Position
2259500..2260843
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AA seq
447 aa
AA seq
DB search
MQSNNLSSIQTSLRVIPRDQHNVSRKEISPNALRVLYRLRDSGFGAYLVGGAVRDILVGG
HPKDFDVATDATPEQVKGLFRNCRLIGRRFRLAHVVYGREIIEVATFRANIDDGSGDRET
DTGGRLVRDNVYGSIEDDAVRRDFTANALYYAVEDFSVRDYVGGFEDVQNRLMRLIGDPV
TRYREDPVRMLRAVRLAAKLDFEIEAATAAPIPQLAPLLAEAAPARLFEECLKLFLSGHA
VQSFLGLERYGLLGALLPESAKALKSNRSGALRRMLLEGLKGTDTRVANDEPVSPAFLFA
LLLWPAYCRELMSLQAQGTHTVEAQRRAADRVTLHQLSMIALPRRFSLPMQEIWLLQSRF
QQRQRKRVMRLLSHPRFRAAFDFLCLRTAASEEHMADVEFWFEAQQHPDAIAHQEASAHS
EDGEEGGDERAPRKRRRRRRGAPVAEG
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccaataacctttcttccatccaaacctcgctgcgggtcattccgcgcgaccag
cacaatgtctcgcgcaaggagatcagccccaacgcgttacgggtgctgtaccggctgcgc
gacagcggcttcggcgcctatctggtcggcggcgcggtgcgcgacatcctggtcggcggc
catcccaaggacttcgacgtcgccaccgacgccacgcccgagcaggtcaaggggctgttc
cgcaactgccgcctgatcggccggcgcttccgcctggcccatgtggtctacggtcgcgag
atcatcgaagtggccacgttccgcgccaatatcgacgacggcagcggcgaccgcgagacc
gacaccggcggccgtctggtccgcgacaacgtctacggcagcatcgaggacgacgcggtc
cgccgcgacttcaccgccaacgcgctgtattacgcggtcgaggatttctcggtgcgcgac
tacgtcggcggcttcgaggacgtgcagaaccggctgatgcggctgatcggcgatccggtc
acccgttaccgcgaggacccggtgcgcatgctgcgcgcggtacgtctggcggccaagctc
gatttcgagatcgaagcggccaccgccgcgccgatcccgcagctggcgccgttgctcgcc
gaagccgcgccggcgcgattgttcgaggaatgcctgaagctgttcctgtccgggcatgcg
gtgcagagcttcctcggcctggaacgctacggcctgctcggcgccttgttgcccgaaagc
gccaaggcgctcaagtccaaccgcagcggcgcgttgcgccggatgctgctggaagggctc
aagggcaccgacacgcgcgtggccaacgacgagccggtgtcgccggcgttcctgttcgcg
ctgctgctgtggccggcgtattgccgcgagctgatgagcctgcaggcgcagggcacccac
accgtcgaggcgcagcgtcgcgccgccgaccgggtgaccttgcaccagttgtcgatgatc
gcgctgccgcgccggttctcgctgccgatgcaggaaatctggctgctgcagtcgcgtttc
cagcagcgccagcgcaagcgggtgatgcggttgctgtcgcatccgcgtttccgcgccgcc
ttcgacttcctgtgcctgcgcaccgcggcgtcggaagagcacatggccgatgtcgaattc
tggttcgaggcgcagcagcatcccgatgcgatcgcccatcaggaagccagcgcgcattcg
gaagacggcgaagagggcggcgacgaacgcgcgccgcgcaagcgccgtcgccgtcgtcga
ggcgcgccggtggccgagggctga
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