Lysobacter capsici: LC55x_2089
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Entry
LC55x_2089 CDS
T04162
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC55x_2089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcp03019
]
LC55x_2089
03009 Ribosome biogenesis [BR:
lcp03009
]
LC55x_2089
Enzymes [BR:
lcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LC55x_2089
Messenger RNA biogenesis [BR:
lcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC55x_2089
Ribosome biogenesis [BR:
lcp03009
]
Prokaryotic type
rRNA helicases
LC55x_2089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
HEM4
Cas3-like_C_2
Flavi_DEAD
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ALN85364
LinkDB
All DBs
Position
complement(2311590..2313680)
Genome browser
AA seq
696 aa
AA seq
DB search
MSADMPNTPTDSPATPKFTDLALSAPLLRALADVGYESPSPIQAATIPPLLEGRDLLGQA
QTGTGKTAAFALPILAQIDPKQFKPQALVLAPTRELAIQVAEAFQKYAVHLPGFHVLPIY
GGQSYYPQLQALKRGVHVVVGTPGRVIDHLDRGTLDLSELRCLVLDEADEMLRMGFIDDV
ENVLKKTPETRQVALFSATMPSQIKRIAQTYLKDPVEIAIKSTTTTAANIRQRYWSVSGV
HKLDALTRILEAESFDAMIVFARTKLGTDELAEKLSARGISAAAINGDVQQQQREKTIQN
LKDGKIDVLVATDVAARGLDVDRISHVLNYDIPYDTESYVHRIGRTGRAGRKGEAILFVT
PRERGMLRAIERATRQPIEPMELPSVETVNEQRVSRFLGKISDALESSDLSLFRDMVERY
EREKNVPAVEIAAALAKLVQGDNPLLLTPPPAPPKYAREERDGPREHRGQATRKFNERDN
ASNSGAHRQDYRQDAPRPDARRADPRPPREYERAAPTPRHEERQYTPPSATRPANAAEAF
FDDEAPAPRQERSHERSQERVPRGESDVGMETFRIEVGHSHGVQPGNIVGAIANEADLES
RYIGRIDIRDDYTLVDLPEGMPRELMEHLKKVRVSGHPLRIQRAAPGDLEGGRSRRPGGP
GAPRPGGHKPHGGPRPGGPGGPRGAHTGPRKPFKPR
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgacatgcccaatacccccaccgattcccccgccactcccaaattcaccgac
ctcgccctgtccgcgccgctgttgcgcgcgctggccgatgtcggctacgagtcgccctcg
ccgatccaggccgcgaccattccgccgctgctggaaggccgcgacctgctcggccaggcc
cagaccggcaccggcaagaccgccgcgtttgcgctgccgatcctggcccagatcgatccc
aagcagttcaagccgcaggcgctggtgctggcgccgacccgcgaactggcgatccaggtc
gccgaggcgttccagaagtacgccgtgcatctgcccggcttccacgtgctgccgatctac
ggcggccagagctactacccgcagctgcaggcgctcaagcgcggcgtgcatgtggtcgtc
ggcaccccgggccgggtgatcgatcacctcgaccgcggcaccctggacctgtccgagctg
cgttgcctggtgctcgacgaagccgacgaaatgctgcgcatgggcttcatcgacgatgtc
gaaaacgtcctcaagaagaccccggaaacgcgccaggtcgcgttgttctcggcgaccatg
ccctcgcagatcaagcgcatcgcccagacctatctgaaagacccggtcgagatcgcgatc
aagtcgaccacgaccaccgccgccaacatccgccagcgctactggtcggtcagcggcgtg
cataagctcgacgcgctgacccgcatcctggaagccgaatccttcgacgccatgatcgtg
ttcgcgcgcaccaagctgggcaccgacgaactggccgagaagctgtcggcgcggggcatt
tcggccgccgcgatcaacggcgacgtgcagcagcagcagcgcgagaagaccatccagaac
ctcaaggacggcaagatcgacgtgctggtcgccaccgacgtcgccgcgcgcggcctcgac
gtggaccgcatcagccacgtgctgaactacgacattccctacgacaccgaaagctacgtc
caccgcatcggccgcaccggccgcgccgggcgcaagggcgaggcgatcttgttcgtgact
ccgcgcgagcgcggcatgctgcgcgcgatcgaacgcgccacccgtcagccgatcgagccg
atggagctgccgagcgtggagacggtcaacgagcagcgcgtttcgcgtttcctcggcaag
atcagcgacgcgctggaaagcagcgacctgagcctgttccgcgacatggtcgaacgctac
gagcgcgagaagaacgtgcccgcggtcgagatcgccgcggccctggccaagctggtgcag
ggcgacaacccgctgctactgaccccgccgccggcgccgccgaagtacgcgcgcgaagag
cgcgacggcccgcgcgaacatcgcggccaggccacgcgcaagttcaacgagcgcgacaac
gcctcgaactccggcgcgcatcgccaggactaccgtcaggacgcgccgcgcccggacgcg
cgccgcgccgacccgcgtccgccgcgcgaatacgagcgcgccgcgccgacgccgcgccac
gaagagcgccagtacaccccgccctcggccacgcgcccggccaacgccgccgaagccttc
ttcgacgacgaagcgccggcgccgcgccaggagcgttcgcacgaacgctcgcaagagcgc
gtgccgcgcggcgagtccgatgtcggcatggagaccttccgcatcgaagtcggccacagc
cacggcgtgcagccgggcaacatcgtcggcgcgatcgccaacgaggccgatctggaaagc
cgctacatcggccgcattgacatccgcgacgactacaccctggtcgacctgcccgagggc
atgccgcgcgaattgatggagcacctcaagaaggtgcgcgtgtccggccatccgctgcgc
atccagcgtgccgcgccgggcgacctcgaaggcggccgttcgcgtcgtccgggtggtccc
ggcgcaccgcgtccgggcggccacaagccgcatggtggcccgcgcccgggtggtcccggt
ggtccgcgcggcgcgcataccgggccgaggaagccgttcaagccgcgctga
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