Lysobacter capsici: LC55x_2104
Help
Entry
LC55x_2104 CDS
T04162
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
lcp
Lysobacter capsici
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcp03016
]
LC55x_2104
Enzymes [BR:
lcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
LC55x_2104
Transfer RNA biogenesis [BR:
lcp03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
LC55x_2104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
ALN85379
LinkDB
All DBs
Position
2326877..2327464
Genome browser
AA seq
195 aa
AA seq
DB search
MHQDSLFGAAPPVSTDTHRLFFALLPDDATRQRMAGVAADIHARHDGGGRLIGAHRYHLT
LQFLGDAHEFQAERAQAAQAAAAEVVANAFELRLDRAGSFRNRSIPWWLGCEHTPAGLQA
LFDRLGVALAKRGVRVEGGHSLTPHVTIVRDAAAALHPPIAIEAIDWWVADFALIHSQLG
ARNAYTVLGQWSLRE
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgcatcaggactccctgttcggcgccgcgccgcccgtttcgaccgacacgcaccgcctg
ttcttcgcgctgttgcccgacgacgcgacgcgccagcgcatggcgggcgtggccgccgat
atccacgcacgccatgacggcggcggccgcctgatcggcgcgcatcgctatcacctgacc
ttgcagttcctcggcgacgcccacgaattccaggccgagcgcgcgcaagcggcgcaggca
gcggcggccgaggtggtcgcgaacgcgttcgaactgcgcctggaccgcgccggcagtttc
cgcaatcgctcgatcccgtggtggctgggttgcgaacacacgccggccggattgcaggcc
ttgttcgatcggctcggcgtcgccctggccaagcgcggcgtgcgggtcgaaggcggccac
agcctgaccccgcacgtgaccatcgtgcgcgatgccgccgcggcgctgcatccgccgatc
gcgatcgaggccatcgactggtgggtcgccgacttcgccttgatccacagccaactcggc
gcgcgcaacgcctacaccgtgctggggcagtggtcgctgcgcgagtga
DBGET
integrated database retrieval system
