Lysobacter capsici: LC55x_2172
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Entry
LC55x_2172 CDS
T04162
Symbol
sdhA
Name
(GenBank) succinate dehydrogenase, flavoprotein subunit
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
lcp
Lysobacter capsici
Pathway
lcp00020
Citrate cycle (TCA cycle)
lcp00190
Oxidative phosphorylation
lcp00650
Butanoate metabolism
lcp00720
Other carbon fixation pathways
lcp01100
Metabolic pathways
lcp01110
Biosynthesis of secondary metabolites
lcp01120
Microbial metabolism in diverse environments
lcp01200
Carbon metabolism
Module
lcp_M00009
Citrate cycle (TCA cycle, Krebs cycle)
lcp_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
lcp_M00149
Succinate dehydrogenase, prokaryotes
lcp_M00982
Methylcitrate cycle
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
LC55x_2172 (sdhA)
00650 Butanoate metabolism
LC55x_2172 (sdhA)
09102 Energy metabolism
00190 Oxidative phosphorylation
LC55x_2172 (sdhA)
00720 Other carbon fixation pathways
LC55x_2172 (sdhA)
Enzymes [BR:
lcp01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
LC55x_2172 (sdhA)
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
Pyr_redox_2
Thi4
GIDA
DAO
HI0933_like
FAD_binding_3
Motif
Other DBs
NCBI-ProteinID:
ALN85447
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Position
2400194..2401987
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AA seq
597 aa
AA seq
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MASAYKIQEHKFDMIVVGAGGAGLRATFGLAQKGLKTACITKVFPTRSHTVAAQGGISAA
LGNMGEDDWRYHFFDTVKGSDWLGDQDAIEYMCKEAIPAIIELEHQGVPFSRTDEGKIYQ
RPFGGMTTKYGEGPPAQRTCAAADRTGHAILHTLYQQSLAHDAQFFIEYFALDLIMDETG
ACRGVLALDMAEGTLHLFRAQGTVLATGGYGRAYFSATSAHTCTGDGGGMALRAGLGLQD
MEFVQFHPTGIYGAGCLITEGVRGEGGILRNSNGERFMERYAPSVKDLAPRDMVSRSMTI
EIREGRGVGEHKDHILLDLTHLGPEVIHEKLPGIAESARIFANVDVEKEPIPVIPTVHYN
MGGIPTNYHGEVVQLKDGNPDAVVEGLYAIGEAACVSVHGANRLGSNSLLDLVVFGRAVA
NRCAETIKPGGPHAKLPADACDAALARLDKLRNASGSTPTSVIRDKMQRTMQADAAVFRT
GETLSDGVRKMREIHALFADVKVSDRSLIWNSDLIETYELSNLLSQALATIVSAENRTES
RGAHAREDFPTRNDDEWQKHTLCYVDEKGSTSIDYRPVHNYTLTDDVAYVPPKERKY
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
gtggcctctgcctacaagattcaagaacacaagttcgacatgatcgtggtcggcgccggc
ggcgccggtctgcgcgccaccttcggtctggcccagaagggcctgaagaccgcgtgcatc
accaaggtcttcccgacccgttcgcacaccgtggccgcgcagggcggcatctccgccgcg
ctgggcaacatgggcgaggacgactggcgttaccacttcttcgataccgtcaagggttcg
gactggctgggcgaccaggacgcgatcgagtacatgtgcaaggaggccatcccggccatc
atcgaactcgaacaccagggcgtgccgttctcgcgcaccgacgagggcaagatctatcag
cgcccattcggcggcatgaccaccaagtacggcgaaggcccgccggcgcagcgcacctgc
gccgccgccgaccgcaccggccacgcgatcctgcacacgctgtatcagcagtcgctggcg
cacgacgcgcagttcttcatcgaatacttcgccctcgacctgatcatggacgagaccggc
gcctgccgcggcgtgctcgcgctcgacatggccgaaggcaccctgcacctgttccgcgcc
cagggcacggtgctggcgaccggcggctacggccgcgcgtacttctccgcgacctcggcc
cacacctgcaccggcgacggcggcggcatggcgctgcgcgccgggctgggcctgcaggac
atggaattcgtgcagttccacccgaccggcatctacggcgccggctgcctgatcaccgaa
ggcgtgcgaggcgagggcggcatcctgcgcaacagcaacggcgagcgcttcatggagcgc
tacgcgccgagcgtgaaggacctcgccccgcgcgacatggtcagccgttcgatgaccatc
gaaatccgcgaaggccgcggcgtcggcgagcacaaggatcacatcctgctcgacctgacc
cacctcggcccggaagtgatccacgaaaaactccccggcatcgccgagtcggcgcgcatc
ttcgccaacgtcgacgtcgagaaggagccgatcccggtcattccgaccgtccactacaac
atgggcggcattccgaccaactaccacggcgaagtcgtgcagttgaaggacggcaacccg
gacgcggtggtcgaaggcctgtacgcgatcggcgaagcggcctgcgtgtcggtgcacggc
gccaaccgcctgggttcgaactcgctgctcgatctggtggtgttcggtcgcgcggtggcc
aaccgctgcgccgagacgatcaagcccggtggcccgcacgccaagttgccggccgacgcc
tgcgacgcggcgctcgcgcgcctggacaagctgcgcaacgccagcggcagcaccccgacc
tcggtgatccgcgacaagatgcagcgcaccatgcaggccgacgcggcggtgttccgcacc
ggcgaaacgctgagcgacggcgtgcgcaagatgcgcgagatccacgcgctgttcgccgac
gtcaaggtcagcgaccgctcgctgatctggaactcggacctgatcgagacctacgagctg
tcgaacctgctgagccaggcgctggcgacgatcgtgtcggccgagaaccgcaccgagtcg
cgcggcgcgcatgcgcgcgaggatttcccgacgcgcaacgacgacgagtggcagaagcac
accctgtgctatgtcgacgagaagggcagcaccagcatcgactaccgtccggtgcacaac
tacaccctgaccgacgacgtggcctacgtgccgcccaaagaacgcaagtactga
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