Lysobacter capsici: LC55x_2994
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Entry
LC55x_2994 CDS
T04162
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC55x_2994 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcp03019
]
LC55x_2994 (pnp)
03016 Transfer RNA biogenesis [BR:
lcp03016
]
LC55x_2994 (pnp)
Enzymes [BR:
lcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LC55x_2994 (pnp)
Messenger RNA biogenesis [BR:
lcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LC55x_2994 (pnp)
Transfer RNA biogenesis [BR:
lcp03016
]
Prokaryotic type
tRNA degradation factors
LC55x_2994 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_PNO1_2nd
AATF-Che1
DUF7680
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ALN86259
LinkDB
All DBs
Position
complement(3418951..3421059)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGNHQVTLETGEIARQAGGSVIVKMDDTVLLVAAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PEVDGDIPALIGASAALALAGTPFQGPIGAAKVGYKNGQYLLNPTATELADSELELVVAG
TSNAVLMVESEAKMLSEEVMLGAVMFGHREMQKVINIINELVVEAGTKPSSWEAPAKNQA
LIGALKEAVGSQLDQAFQVRDKLQRRDAISAIKKDVLQSLAGRAEADGWQTAELSKEFGE
LEYQTMRNSVLSTKVRIDGRALDTVRPIASRVGVLPRTHGSSLFTRGETQAIVVATLGTA
RDGQIIDAVSGEYKEHFLFHYNFPPYSVGECGRMMGPKRREIGHGRLAKRGVLAVMPTME
EFPYTIRIVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEDDNFVVLS
DILGDEDHLGDMDFKVAGTATGISALQMDIKIQGITEEIMKVALDQAKAGRLHILGEMAH
ALTESRTELSEYAPRLLTMKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAAAAQAAKARIDQIVSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVSDKLKEGDIVKVKVLEVDKQGRIRLSIKAVEEGEGVAAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaattaccaagaccttccagtacggcaaccatcaggtaaccctggagaccggc
gaaatcgcccgtcaggccggcggttccgtgatcgtcaagatggacgacaccgtattgctg
gtggccgccgtcgccgccaagagcgcgcgcgagggccaggacttcttcccgctgaccgtg
gattaccaggagaagttctacgccggcggtcgcatcccgggcggcttcttcaagcgtgaa
ggccgcgcgaccgagaaggagacgctgatctcgcgtctgatcgaccgtccgatccgtccg
ctgttcccggaagactacaagaacgaagtccagatcatcgcgaccgtcatgtcgatgaat
ccggaagtcgacggcgacatcccggcgctgatcggcgcgtccgccgcgctcgcgctggcc
ggcaccccgttccagggcccgatcggcgcggccaaggtcggttacaagaacggccagtac
ctgctcaacccgaccgcgaccgaactggccgactccgagctcgagctcgtcgtcgccggt
acctccaacgcggtgctgatggtcgaatccgaagccaagatgctgtccgaagaggtcatg
ctcggcgcggtgatgttcggccatcgcgaaatgcagaaggtcatcaacatcatcaacgag
ctggtcgtcgaagccggcaccaagccgtcgtcgtgggaagctccggccaagaaccaggcg
ctgatcggcgcgctcaaggaagccgtcggcagccagctcgaccaggccttccaggtgcgc
gacaagctgcagcgccgcgacgccatcagcgcgatcaagaaggacgtgctgcagagcctc
gccggccgcgccgaagccgacggttggcagaccgccgagctgtcgaaggaattcggcgag
ctcgagtaccagaccatgcgcaactcggtgctcagcaccaaggtccgcatcgacggtcgc
gcgctcgacaccgtgcgtccgatcgcctcgcgcgtcggcgtgctgccgcgcacccatggc
tcctcgctgttcacccgcggcgagacccaggcgatcgtggtcgccaccttgggcaccgcg
cgcgacggtcagatcatcgacgccgtctcgggcgagtacaaggaacacttcctgttccat
tacaacttcccgccctactcggtcggcgagtgcggccgcatgatgggcccgaagcgtcgc
gaaatcggccacggccgtctcgccaagcgcggcgtgctcgcggtgatgccgacgatggaa
gagttcccgtacaccatccgcatcgtctcggaaatcaccgagtccaacggctcgtcctcg
atggcctcggtctgcggcagctcgctggcgctgatggatgccggcgtgccgatcaaggcg
ccggtcgccggtatcgcgatgggcctggtcaaggaagacgataacttcgtcgtcctgtcc
gacatcctgggcgacgaggatcacctcggcgatatggacttcaaggtcgccggcaccgcc
acgggcatctcggcgctgcagatggacatcaagatccagggcatcaccgaagagatcatg
aaggtcgcgctggatcaggcgaaggccggccgtctgcacatcctcggcgagatggcgcac
gccctcaccgagtcgcgcaccgagctgtccgagtacgcgccgcgtctgctgaccatgaag
atccatccggacaagatccgcgaagtgatcggcaagggcggttcgaccatccaggcgatc
accaaggaaaccggcacccagatcgacatccaggacgacggcaccatcgtcatcgcctcg
gtcaacgccgccgccgcgcaggccgcgaaggcgcgcatcgaccagatcgtgtccgacgtc
gagccgggccgcatctacgagggcaaggtcgccaagatcatggacttcggtgcgttcgtg
acgatcctgccgggcaaggacggtctggtccacgtgtcgcagatctccagcgagcgcgtc
gagaaggtcagcgacaagctcaaggaaggcgacatcgtcaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatcaaggccgtggaagaaggcgagggcgtcgcg
gccgagtaa
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