Lysobacter capsici: LC55x_2996
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Entry
LC55x_2996 CDS
T04162
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
lcp
Lysobacter capsici
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcp03016
]
LC55x_2996 (truB)
Enzymes [BR:
lcp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LC55x_2996 (truB)
Transfer RNA biogenesis [BR:
lcp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LC55x_2996 (truB)
Prokaryotic type
LC55x_2996 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
ALN86261
LinkDB
All DBs
Position
complement(3421851..3422783)
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AA seq
310 aa
AA seq
DB search
MNTTRKRNWRNVDGILLLDKPEGLSSNQALQQARHLFRAEKGGHTGSLDPLATGLLPLCF
GEATKIAGLLLGARKAYTATAVLGLTTDSDDADGAPLLERPVPDLDEAAIEAALAPLRGP
IRQRAPIYSALKQGGEPLYAKARRGEAIEAPERDVVVHDLSLTGRDGPRLQLHIECGSGT
YVRSLVRDLGETLGCGAHVSVLRRLWVEPFMQPRMITLEQLRALAEQGSDVALDAHLLPI
EAGLSEFARVSIDLAAAHRLGQGQAVACEAGEPGQVAIFGEAGRCLGLGLRQADGRLQPQ
RLFRWAAQGG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
ttgaacacgacgcgtaaacgcaattggcgcaacgtcgacggcatcttgctgctcgacaaa
cccgagggcttgagttccaaccaggccctgcaacaggcgcgccacctgttccgcgccgag
aagggcggccacaccggcagtctcgaccccttggccaccggcctgttgccgctgtgcttc
ggcgaggcgaccaagatcgccggcctgctgctcggcgcgcgcaaggcctacaccgccacc
gcggtgctcggcctgaccaccgacagcgacgacgccgacggcgcgccgctgctcgaacgc
cccgtgcccgatcttgacgaggccgcgatcgaggccgcactggcccctttgcgcggcccg
atccgccagcgcgcgccgatctattccgcgctcaagcagggcggcgagccgctgtacgcc
aaggcccgccgcggcgaagcgatcgaggcgcccgaacgcgacgtggtcgtgcacgatctg
agcctgaccggccgcgacggcccgcgtctgcaactgcatatcgaatgcggctcgggcacc
tacgtgcgcagcctggtccgcgacctcggcgagaccctgggctgcggcgcgcatgtcagc
gtgctgcggcggctgtgggtcgagccgttcatgcagccgcgcatgatcaccctggaacaa
ttgcgcgcactggccgagcagggcagcgatgtcgccctggacgcccacctgctgccgatc
gaagccggcctgagcgaattcgcccgggtctcgatcgacctggccgccgcgcaccggctc
ggtcagggccaggcggtcgcctgcgaggccggcgagccgggtcaggtggcgatcttcggc
gaagccgggcgctgccttgggctgggcctgcgccaggccgacggccggctgcagccacag
cgcctgttccgctgggccgcgcaaggcggttga
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