Lysobacter capsici: LC55x_3576
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Entry
LC55x_3576 CDS
T04162
Name
(GenBank) hhH-GPD superbase excision DNA repair family protein
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LC55x_3576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_3576
Enzymes [BR:
lcp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LC55x_3576
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LC55x_3576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
ALN86833
LinkDB
All DBs
Position
complement(4006082..4006780)
Genome browser
AA seq
232 aa
AA seq
DB search
MPRQVRGYDAQAAYAHLSKRDRKLGAWMKKVDALEGGPIPSDPRWRKSFDPVDALARAIL
FQQLSGKAASTIVGRVEAAIGASRLHYDTLGRCDDATLRGCGVSGNKLLALRDLAAREAR
GEIPDLRRMASMDNDAIIAALVPIRGIGRWTVEMMLMFRLGRPDILPVDDLGIRKGAQRV
DKLEAMPAPKALAELGERWGPYRSYASLYLWRIADIADGPKIGKAKTNRSQD
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccaggttcgcggttacgacgcacaggcggcttacgcgcacttgagcaagcgc
gaccgcaagctcggtgcgtggatgaagaaagtcgacgcgctcgaaggcggcccgatcccg
agcgatccgcgttggcgcaagagcttcgatccggtcgatgcgctggcgcgcgcgatcttg
ttccagcagctcagcggcaaggccgcctcgaccatcgtcggccgggtcgaagccgcgatc
ggcgcgagccgcctgcattacgacaccctgggccgctgcgacgacgcgaccttgcgcggc
tgcggcgtgtcgggcaacaagctgctggcgctgcgcgatctggcggcgcgcgaagcgcgc
ggcgagattcccgatctgcggcgcatggcgagcatggacaacgacgcgatcatcgccgcg
ctggtgccgatccgcggcatcggccgctggaccgtggagatgatgctgatgttccggctg
ggccgacccgacatcctgccggtcgacgacttgggtattcgcaagggcgcacaacgcgtc
gacaaactcgaggcgatgcccgcgccgaaggcgctggccgaactcggcgagcgctggggg
ccgtatcgcagctatgccagcttgtatctgtggcggatcgccgatatcgccgacggaccg
aagatcggcaaggccaagacgaatcgttcgcaggattga
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