Lysobacter capsici: LC55x_3692
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Entry
LC55x_3692 CDS
T04162
Name
(GenBank) tRNA pseudouridine synthase, TruD family protein
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
lcp
Lysobacter capsici
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcp03016
]
LC55x_3692
Enzymes [BR:
lcp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
LC55x_3692
Transfer RNA biogenesis [BR:
lcp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LC55x_3692
Prokaryotic type
LC55x_3692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ALN86949
LinkDB
All DBs
Position
complement(4125113..4126225)
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AA seq
370 aa
AA seq
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MNSPDQTSHDPSTTDAAAASAPDHSLPRAHGAPALRARIRNAPEDFRVEELPGFAASGSG
EHLLLTIEKRGMNTAFAAKRLATWAGIGEVGIGYAGMKDRHAVTVQRFSVHLPKRVAPDL
ALLESDDLRVLEHQWHAKKLPRGALAGNRFVLTLRNVEGERAAIEARLARIAAHGVPNYF
GEQRFGRGGDNVANALAMFAGRRMGREQRSMLLSAARSELFNRVLAARVNDRSWSGLREG
APLAGEVWALAGSRSVFGPEPWNDTLAQRLAEFDLHPSGPLWGRGELRSQDEVRELELSA
LQGEQAAALRAGLELAGLDQERRALRLRPDAPAWRWLEDDVLEVGFALPAGAYATVVLAE
LGEIESGAHA
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
ttgaattcccctgaccagacctcgcacgacccttcgaccaccgacgcggcagcggcgtcc
gcgcccgatcacagcctgccgcgcgcccacggcgcgcccgcgctgcgcgcgcgcatccgc
aatgcgcccgaggattttcgggtcgaggagctgcctggtttcgccgccagcggcagcggc
gagcatctgctgctgaccatcgaaaagcgcggcatgaacaccgcgttcgcggccaagcgg
ctggcgacctgggccggcatcggcgaggtcggcatcggctatgccgggatgaaggaccgc
cacgcggtcaccgtgcagcgtttcagcgtgcatctgcccaagcgcgtcgcgcccgatctg
gccttgctggaaagcgacgacctgcgcgtgctcgaacatcagtggcacgccaagaaactg
ccgcgcggcgcgttggccggcaatcgcttcgtgttgaccctgcgcaacgtcgaaggcgag
cgcgcggcgatcgaagcgcggctggcgcggatcgccgcgcacggcgtgcccaattatttc
ggcgaacaacgcttcggccgcggcggcgacaacgtcgccaatgcgctggcgatgttcgcc
ggccgccgcatgggccgcgagcagcgcagcatgctgctgtcggcggcgcgttcggaattg
ttcaaccgggtgctcgccgcgcgcgtcaacgaccgcagctggagcggtctgcgcgagggc
gcgccgctggcgggcgaggtctgggcgctggccggcagccgcagcgtgttcggtccggag
ccgtggaacgacaccctggcccagcgcctggccgaattcgatctgcatcccagcggcccg
ttgtggggccgcggcgagctgcgcagccaggacgaagtgcgcgaactggagctgtcggcc
ctgcagggcgaacaggccgcggcgctgcgcgcgggcctggagttggccggtctggatcag
gaacgccgcgcgctgcggctgcgcccggacgcgccggcgtggcgctggcttgaggacgac
gtgctggaagtcggcttcgccttgccggccggcgcctacgcgacggtggtgctggccgag
ctgggcgagatcgaatccggtgcccacgcctag
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