Lysobacter capsici: LC55x_3825
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Entry
LC55x_3825 CDS
T04162
Name
(GenBank) alkA N-terminal domain protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LC55x_3825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcp03000
]
LC55x_3825
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_3825
Enzymes [BR:
lcp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LC55x_3825
Transcription factors [BR:
lcp03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LC55x_3825
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LC55x_3825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
ALN87082
LinkDB
All DBs
Position
4253457..4255058
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AA seq
533 aa
AA seq
DB search
MNSKPDPVATPAPSASLPQWQVCEQARLSRDPRFDGLFFTAVTSTGIYCRPVCPAPAAKR
ENVKYFGHAAAAEAAGFRPCLRCRPELSPAEGAWRRGDAAIARALKLIDEGALAEQPLAA
LAERVGLGERQLRRLFVDRLGAPPIGVHSTRRLLFAKQLLTETRLPITEVAMAAGFGSLR
RFNTTFREAYRMAPRDLRRHPNETPDSDGETLVLRLGYRPPYDFALMLDFLRGRALPGVE
VVDEHSYSRVIGPIEAPGWLRVSAWPSVKNEPQHALKLELHGPAPARLLEIINRLRRMFD
LDADPNAIGAALSVDPRLRALVAKRPGLRLPSGWDGFEISVRAILGQQVSVAAARTLASR
TAQRFGQPLPKAFGPGLEHLFPTPEALADADLAEIGLTRARADTVRTVARALLDGRVDFR
TERTLDEFVARWVALPGIGPWTAHYIALRALGHPDAFPADDLVLQKALPEDGIRMSAKAL
NARAEAWRPWRAYAVIQIWRDSMSTPLAKPAAKSAIEPPGKSPMKTRKARKAA
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcaaacccgaccccgtcgccacccccgcccccagcgcctcgctgccgcaatgg
caggtgtgcgaacaggcccggctcagccgcgatccgcgcttcgacgggctgttcttcacc
gcggtgaccagcaccggcatctattgccggccggtgtgcccggcgcccgcggccaagcgt
gagaacgtcaaatacttcggccacgccgccgcagccgaagccgccgggtttcggccgtgt
ttgcgctgccgcccggagttgtcgccggccgaaggcgcgtggcgccgcggcgatgcggcg
atcgcgcgcgcgctcaagttgatcgacgagggcgcgctggccgaacagccgctggccgcg
ctggccgagcgcgtcgggctgggcgaacgccagttgcggcgcttgttcgtcgatcgcctc
ggcgcgccgccgatcggcgtgcacagcacccgccgcctgttgttcgccaagcagttgctg
accgaaacccgcctgccgatcaccgaagtcgcgatggccgccggtttcggcagcctgcgc
cgcttcaacaccaccttccgcgaggcctatcggatggcgccgcgcgatctgcgtcggcac
ccgaacgaaacccccgacagcgacggcgaaacgctggtgctgcggctgggctatcggccg
ccgtacgacttcgcgctgatgctggatttcctgcgcggccgcgccctgccgggcgtggaa
gtcgtcgacgaacacagctatagccgggtgatcgggccgatcgaagcgccgggctggttg
cgagtcagcgcctggcctagcgtcaagaacgagccgcagcacgcgctcaagctcgaattg
cacgggccggcgccggcgcggctgctggagatcatcaatcgcttgcgacgcatgttcgat
ctggacgccgacccgaatgcgatcggcgccgcgctgtcggtcgatccgcgactgcgcgcg
ctggtcgccaagcgtcccgggctgcggttgcccagcggctgggacggtttcgaaatttcg
gtgcgcgcgatactcggtcaacaggtcagcgtcgccgccgcgcgcacgctcgcctcgcgc
accgcgcaacgtttcggccaacccttgccgaaagcgttcgggcccggactggagcatctg
ttcccgacgcccgaagcgctggccgatgcggatctggccgaaatcggcctgacccgcgcc
cgcgccgacaccgtgcgcaccgtggcgcgcgccttgctcgacggccgggtcgactttcgc
accgaacgcacgctcgacgagttcgtcgcgcgttgggtcgcgctgcccgggatcgggccg
tggaccgcgcactacatcgcgctgcgcgcgctcggccatcccgatgcgttcccggccgac
gatctggtcctgcagaaagcgctgcccgaagacggcatccgcatgagcgcgaaggcgctc
aacgcccgcgccgaagcgtggcggccatggcgcgcgtacgcggtgatccagatctggcgc
gacagcatgtcgacgccgcttgcgaaacccgcggccaaatccgcgatcgagccgccgggc
aaatcgccgatgaagacgcgcaaagcgagaaaggccgcatga
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