Lysobacter capsici: LC55x_4166
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Entry
LC55x_4166 CDS
T04162
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lcp
Lysobacter capsici
Pathway
lcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LC55x_4166 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcp03019
]
LC55x_4166 (recQ)
03400 DNA repair and recombination proteins [BR:
lcp03400
]
LC55x_4166 (recQ)
Enzymes [BR:
lcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LC55x_4166 (recQ)
Messenger RNA biogenesis [BR:
lcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LC55x_4166 (recQ)
DNA repair and recombination proteins [BR:
lcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LC55x_4166 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ALN87417
LinkDB
All DBs
Position
4629689..4631506
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AA seq
605 aa
AA seq
DB search
MPSPALELLHRVFGHTAFRGEQAQIVQHVIDGGDALVLMPTGGGKSLCYQIPSLIREGCG
LVVSPLIALMQDQVEAMRQLGVRAAYLNSTLSSEDAAEVERQLLAGELDLLYVAPERLLS
GRCLNLIDRAKIALFAIDEAHCVSQWGHDFRPEYRELTILHERWPDIPRIALTATADEPT
QREIAERLTLEDARRFVSSFDRPNVRYRVVHKDNGTRQLLDFLAGHRDESGIVYAFSRKR
VESVAEQLAAAGIKALPYHAGIDAGVRAANQRRFLQEDGVVMVATIAFGMGIDKPDVRFV
AHIDLPKSIEGYYQETGRAGRDGEPAEAWLCYGLGDVVNLRQLIQQGEAGEERKRLELRK
LDSLLGFCESTECRRKALLGWFGEPHPGNCGNCDNCMEPPQSWDGTTAARKALSCVYRTG
QRFGAGHVIDVLRGTATEKVTRFGHEALSTFGIGSDLDVKQWSSVFRQLVAAGLLEADIE
RHGALRLTADSAPVLRGERELRFRTEAPKAARASTRKTRGGAGAAPMIDMDPASLLRFNA
LREWRSTTAREQNVPAYVIFHDSTLRAIAEQAPDDLDDLGRIPGIGVSKLDRYGEAVLQH
LLDHG
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgccttcccccgcactcgagttactgcaccgcgttttcggccataccgcgtttcgcggc
gaacaggcgcagatcgtccagcacgtgatcgacggcggcgacgccctggtgctgatgccc
accggcggcggcaagtcgctgtgctaccagattccctcgctgatccgcgaaggctgcggc
ctggtggtctcgccgctgatcgcgctgatgcaggaccaggtcgaagcgatgcgccagctc
ggcgtgcgcgcggcctatctcaattccaccctgagcagcgaggacgcggccgaggtcgaa
cgccagttgctggccggcgagctcgatctgctctacgtcgcgcccgagcgcctgctcagc
ggccgctgcctgaacctgatcgaccgcgccaagatcgccctgttcgcgatcgacgaggcg
cactgcgtatcgcaatggggccacgacttccgccccgaataccgcgaactgaccatcctg
cacgagcgctggcccgacatcccgcgcatcgccctgaccgccaccgccgacgagccgacc
cagcgcgagatcgccgagcggctgacgttggaggacgcgcgccgcttcgtcagctcgttc
gaccgtcccaatgtgcgctaccgcgtggtgcacaaggacaacggcacccgtcagctgctc
gatttcctcgccgggcatcgcgacgaaagcggcatcgtctatgcgttctcgcgcaagcgg
gtggaatcggtggccgagcaactggccgccgccgggatcaaggccctgccctaccacgcc
ggcatcgacgccggcgtgcgcgccgccaaccagcgccgtttcctgcaggaagacggcgtg
gtgatggtcgcgacgatcgccttcggcatgggcatcgacaaacccgacgtgcgtttcgtc
gcccacatcgacctgcccaagtcgatcgaaggctattaccaggagaccggacgcgccggc
cgcgacggcgaaccggccgaagcctggctgtgctacggcctgggcgatgtggtcaacctg
cgccagctgatccagcaaggcgaagccggcgaggaacgcaagcgtcttgagctgcgcaag
ctcgattccctgctgggcttctgcgaatccaccgaatgccggcgcaaggcgctgctcggg
tggttcggcgagccgcatccgggcaactgcggcaactgcgacaactgcatggagccgccg
cagagctgggacggcaccaccgccgcgcgcaaggcgctgtcgtgcgtgtaccgcaccggc
cagcgcttcggcgccggtcatgtgatcgacgtgttgcgcggcaccgcgaccgagaaagtc
acccgtttcggtcacgaagcgctgagcaccttcggcatcggcagcgacctggacgtcaaa
cagtggagcagcgtgttccggcaactggtcgcggccggcctgctggaagccgatatcgaa
cgccacggcgccctgcggctgaccgccgacagcgcgccggtgctgcgcggcgaacgcgag
ctgcgctttcgcaccgaagcgcccaaggccgcgcgcgccagcacccgcaagacccgcggc
ggcgcgggcgcggcgccgatgatcgacatggacccggcctcgctgctgcgcttcaacgcc
ctgcgcgaatggcgctcgaccaccgcgcgcgaacagaacgtgccggcctatgtgatcttc
cacgacagcaccttgcgcgcgatcgccgaacaggcgcccgacgacctcgacgaccttggc
cgcatccccggcatcggcgtgagcaagctcgatcgctatggcgaggcggtgttgcagcat
ttgctcgatcacggctga
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