Lysobacter capsici: LC55x_4303
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Entry
LC55x_4303 CDS
T04162
Name
(GenBank) serine hydroxymethyltransferase family protein
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
lcp
Lysobacter capsici
Pathway
lcp00260
Glycine, serine and threonine metabolism
lcp00460
Cyanoamino acid metabolism
lcp00630
Glyoxylate and dicarboxylate metabolism
lcp00670
One carbon pool by folate
lcp00680
Methane metabolism
lcp01100
Metabolic pathways
lcp01110
Biosynthesis of secondary metabolites
lcp01120
Microbial metabolism in diverse environments
lcp01200
Carbon metabolism
lcp01230
Biosynthesis of amino acids
lcp01240
Biosynthesis of cofactors
lcp04981
Folate transport and metabolism
Brite
KEGG Orthology (KO) [BR:
lcp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
LC55x_4303
09102 Energy metabolism
00680 Methane metabolism
LC55x_4303
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
LC55x_4303
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
LC55x_4303
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
LC55x_4303
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
LC55x_4303
Enzymes [BR:
lcp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
LC55x_4303
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Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Urate_ox_N
DUF732
Motif
Other DBs
NCBI-ProteinID:
ALN87553
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Position
complement(4771585..4772874)
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AA seq
429 aa
AA seq
DB search
MFPSHTRIAGFDDELAQAIAAEARRQEDHVELIASENYASPRVLEAQGSVLTNKYAEGYP
GKRYYGGCEFVDIAEQLAIDRVKELFGADYGNVQPHSGSQANQAVYFALLNPGDTILGMS
LAHGGHLTHGAKVNASGKLFNAIQYGVNELGLIDYDEVERLALEHKPKMVVAGFSAYSQV
VDWARFRAIADKIGAYLFVDMAHVAGLIAAGVYPSPVPHAHVVTSTTHKTLRGPRGGIIV
AKRWEGSVDAGSGAVDFDEMQKKLQSIVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYQ
AQVVKNAQAMAKTIVARGYKIVSGGTENHLMLVDMIGKGITGKDAEAALGRAHITVNKNA
VPNDPQKPFVTSGLRIGTPAVTTRGYKEPDCVALAEWICDVLDNPKDENVIAGVRENVTR
QCAQFPVYG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgttccccagccacacccgtattgccggattcgatgacgaactcgcccaggccatcgcc
gccgaggcccgccggcaggaagaccatgtcgaactgatcgcctcggaaaactacgccagc
ccgcgcgtgctcgaggcccagggcagcgtgctgaccaacaagtacgccgaaggctatccg
ggcaagcgctattacggcggctgcgaattcgtcgacatcgccgagcagctggcgatcgac
cgggtcaaggaattgttcggcgccgactacggcaacgtgcagccgcattcgggctcgcag
gccaaccaggcggtgtatttcgccctgctcaatccgggcgacaccatcctcggcatgagc
ctggcccacggcggccacctcacccacggcgccaaggtcaacgccagcggcaagctgttc
aacgcgatccagtacggcgtcaacgaactgggcctgatcgattacgacgaagtcgaacgc
ctggccctggagcacaagccgaagatggtcgtggccggcttcagcgcctactcgcaggtg
gtcgactgggcgcgtttccgcgccatcgccgacaagatcggcgcgtatctgttcgtcgac
atggcccatgtcgccggcctgatcgccgccggcgtgtacccgagcccggtcccgcatgcg
cacgtggtcacctcgaccacccacaagaccctgcgcggcccgcgtggcggcatcatcgtg
gccaagcgctgggaaggttcggtcgacgccggcagcggcgcggtcgatttcgacgagatg
cagaagaagctgcagagcatcgtgttcccgggcatccagggcggtccgctgatgcacgtg
atcgcggccaaggcggtcgcgttcaaggaagcgctggagcccgaattcaaggaataccag
gcccaggtcgtcaagaacgcccaggccatggccaagaccatcgtcgcgcgcggctacaag
atcgtttcgggcggcaccgaaaaccatctgatgctggtcgacatgatcggcaagggcatc
accggcaaggacgcggaagccgcgctcggccgcgcccacatcaccgtcaacaagaacgcg
gtgccgaacgatccgcagaagccgttcgtgacctcgggcctgcgcatcggcaccccggcc
gtcaccacccgcggctacaaggaacccgactgcgtggccctggccgagtggatctgcgac
gtgctcgacaacccgaaggacgagaacgtcatcgccggcgtgcgcgagaacgtgaccagg
cagtgcgcgcagttcccggtgtatggctaa
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