Lysobacter capsici: LC55x_4977
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Entry
LC55x_4977 CDS
T04162
Symbol
lgrD
Name
(GenBank) linear gramicidin synthase subunit D
Organism
lcp
Lysobacter capsici
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Condensation
AMP-binding
NAD_binding_4
PP-binding
Epimerase
AMP-binding_C
3Beta_HSD
NAD_binding_10
GDP_Man_Dehyd
Polysacc_synt_2
DUF1800
KR
Motif
Other DBs
NCBI-ProteinID:
ALN88224
UniProt:
A0A0S2FXT7
LinkDB
All DBs
Position
5507267..5511817
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AA seq
1516 aa
AA seq
DB search
MNPSSSNPADTGAATTVSDAAAERLARLSPQQRELLLRQLAARNAAAAPKPDAVTRRSVA
GMALPLSPAQQRMWFFERFQPGTGAYHVCDHLRLRGALDVATLRNAFAHIVRRHDTLRTG
FSEVAGEPRQTVFDEVVFDIPTIDLSHLAPELREQEIQRLVDAETERPFDLGKPPLMRAS
LLRVDAHDHVLMVVLHHIVSDAWSIGVIYDELGRLYAAGLDGASLDAVLPELAVQFGDCV
LWQREPAQEQRVAAHMAFWRDALAGHAGLLDLPTDQPRSATALGRGRRQSLQLPKALADG
VAELARREGATLFMALLAAFQTLLARHSGQDDIVVGSPVANRGLAESTPLIGLFVNTVAL
RGDLSGDPSFRQLLARTRSHCLDAFEHVQAPLERVVDQLRIERVPGRTPLFQTMFVLQNA
VGAPLSLPGLELDWINPQTQAARFELTLSLAAGSDGINGVLDYDIDLFDAGTAQRLLRQF
EHLLGDALAHPDRPLSQLALLDEADRHELLRLGHGGDAELDDAHEHLYAMFAQQAARTPD
AVALIEPGRELTYRELLQRANGLGLALQALGVGAESRVGVLTDRSIEALVAVLGVLAAGA
AYLPLDPAHPDERLHFLLDDTAALALVTPPQWRARAEALNLRVPVLISDEIAASANAPAL
EFAPGHAAYVIYTSGSTGQPKGVVIEHRGAANLTRGFMARHDFKDQRLLMIPPLVFDASV
GDVFPALASGSALVLHPNPTELGPFELEAFCREHRISAIDAPAALWRRWSEGWSTIVRSE
PLLPHLRLMMIGGESVAVEQVRRFAQITDGRVALSNHYGPTETSVCAAMLSTIDASEYVA
RELPIGRPLPGVRLYVLDPHGALAPRGVVGELCIGGLGVARGYLNQPELSATSFPPDPFA
ADGRLYRTGDLARWNSDGSLQFLGRRDHQIKLRGFRIELGEIETALESHAQVEAAVVLLR
EDRPGDKRLVAYVVADEASGPNQWREHLARSLPEALLPSAYVRLSAMPLNRNGKVDRKAL
PEPSAELLVERTVIEARTDTERAVLAVWRDVLGREEISADDDFFSIGGDSLMTLPLVFKL
HAALGVELPLASVFAAPTLAAQARRIDELLSGEAVDEFDLAAQVQLADEIHPRNATLPAA
SRANPRSAFITGATGFLGAYMVRELLDVSSAEVVCLVRAADADEGVARIRANLQGYGLWR
SGDEARLAIVLGDLAQPRMGLDEAAFDALAQRAEVIFHNGGQVNFLAPYQHLEAANVGGT
REVLRLATLHRIKPVHLVSTLGVCLTASNLDRTVFESDPPPSADEQYGGYNQSKWVGEQL
ALVARERGLPVAIYRPARITGDSHTGASNLGDYFNAWLKGCVQMGRAPHLPNEAFDMAPV
DYVGRSIVRIALGAGDANGNFHFYNRRRLPIPTAVATLREAGLALEEIDYQQWRRELLAH
AAVSRDNALAPFAGLFPANPDPREPSFDCSAVTRAVEPLGLICPPADAALLRLYVRFLQS
RDFFPANTKAIAEVSA
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgtcttcttccaatcccgccgacaccggcgccgccaccaccgtctccgacgcg
gcggccgagcgccttgcgcgactgagcccgcaacagcgcgaactgctgttgcgtcagctc
gccgcgcgcaacgccgcggccgcgccgaagcccgacgcggtgacgcgccgcagcgtcgcc
ggcatggcgttgccgttgtcgccggcgcaacagcggatgtggttcttcgagcggttccag
ccgggcaccggcgcgtatcacgtctgcgatcacctgcgcctgcgcggcgcgctcgatgtc
gccaccttgcgcaacgcgttcgcgcatatcgttcgccgtcacgacaccttgcgcaccggt
ttcagcgaagtcgccggcgaaccgcgccagaccgtgttcgacgaggtggtcttcgatatt
ccgaccatcgacctgagccatctggcgccggaactgcgcgagcaggagatccagcgtctg
gtcgatgccgagaccgagcgtccgttcgatctgggcaagccgccgctgatgcgcgcgagc
ctgctgcgggtcgacgcgcacgatcacgtgctgatggtcgtgctgcatcacatcgtctcc
gacgcgtggtcgatcggagtgatctacgacgaactcggccgtctgtacgcggccggcctc
gacggcgcgtcgctcgacgcggtattgccggaactggccgtgcagttcggcgactgcgtg
ctgtggcagcgcgaaccggcgcaggaacagcgcgtcgccgcgcacatggcgttctggcgc
gatgcgttggccggccatgccggcctgctcgatctgccgaccgaccagccgcgttcggcg
accgcgctcggacgcggacgccggcagtcgctgcagctgcccaaggccttggccgacggc
gtggccgaactcgcgcggcgcgaaggcgcgaccttgttcatggccttgctggccgcgttc
cagaccttgctcgcacgtcacagcggccaggacgacatcgtggtcggttcgccggtcgcc
aaccgcggcctggccgaatcgaccccgttgatcggtttgttcgtcaacaccgtggcgctg
cgcggcgatctcagcggcgatccctcgttccgccagttgctggcgcgcacgcgctcgcac
tgcctggacgcgttcgaacacgtgcaggcgccgctcgagcgcgtggtcgatcaattgcgg
atcgagcgcgtgcccggccgcacaccgctgttccagaccatgttcgtgctgcagaacgcg
gtcggcgcgccgctgagcctgcccggcctggaactggactggatcaatccgcagacccag
gccgcgcgcttcgaactgaccttgtcgctggccgccgggtccgacggcatcaacggcgtg
ctcgactacgacatcgacctgttcgacgccggtaccgcgcagcgtctgctgcgccagttc
gaacacctgctcggcgatgcgctcgcgcatcccgaccggccgctgtcgcagctcgcgctg
ctggacgaggccgatcgccatgaattgctgcgcctgggccatggcggcgacgccgaactc
gacgacgcgcacgagcatctgtacgcgatgttcgcgcagcaggccgcgcgcacgcccgac
gcggtcgccttgatcgaacccggccgcgagctgacctatcgcgagctgctgcaacgcgcc
aacggcctcggtcttgcgttgcaggcgctcggcgtcggcgcggaatcgcgggttggcgta
ttgaccgatcgctcgatcgaagcgctggtcgcggtgctcggtgtgctcgccgcgggcgcg
gcttatctgccgctggacccggcgcatccggacgaacgcctgcatttcctgctcgacgac
accgccgcgctggcgctggtgacgccgccgcagtggcgcgcgcgcgccgaggccttgaac
ctgcgcgtgccagtgctgatcagcgacgaaatcgccgcgtcggcgaacgcgcccgcgctc
gagttcgcgcccgggcacgccgcctacgtcatctacacctccggttcgaccggccagccc
aagggcgtggtgatcgagcaccgcggcgcggcgaatctgacccgcggcttcatggcgcgg
cacgatttcaaggatcagcgcctgctgatgatcccgccactggtgttcgacgcctcggtc
ggcgatgtgttcccggccttggcgagcggttcggcgctggtgctgcatcccaatccgacc
gagctgggcccgttcgaactcgaagcgttctgccgcgagcaccggatcagcgcgatcgac
gcgccggccgcgctgtggcggcgctggagcgaaggctggtcgacgatcgtgcgcagcgag
ccgctgctgccgcatctgcgcctgatgatgatcggcggcgaaagcgtcgcggtcgaacag
gtgcgccgcttcgcccagatcaccgacggccgggtcgcgctgagcaatcactacggcccg
accgaaacctccgtctgcgcggccatgctcagcaccatcgacgccagcgaatacgtcgcg
cgcgagctgccgatcggccgtccattgccgggcgtgcggctgtacgtgctcgatccgcac
ggtgcattggcgccgcgcggcgtggtcggcgagctgtgcatcggcggcctcggcgtggcg
cgcggctatctcaatcaacctgagctcagcgcgacgagttttccgcccgatccgttcgcg
gccgatggccggctgtaccgcaccggcgatctcgcccgctggaacagcgacggcagcctg
caattcctcggccgccgcgatcatcagatcaagctgcgcggtttccgcatcgagctgggc
gagatcgaaaccgcgctggagtcgcatgcgcaggtcgaagccgcggtggtgctgctgcgc
gaagaccggcccggcgacaaacgcctggtcgcttacgtcgtcgccgatgaagccagcggc
ccgaaccaatggcgcgagcatctcgcccgcagcctgcccgaagcactgctgccgtcggcg
tatgtgcgtctgtcggcgatgccgctcaaccgcaacggcaaggtcgatcgcaaggcgctg
cccgaaccgagcgccgaactgctggtcgaacgtaccgtgatcgaagcgcggaccgatacc
gagcgcgccgtgctcgcggtctggcgcgacgtgctcggccgcgaggagatcagcgccgac
gacgatttcttctcgatcggcggcgattcgctgatgaccctgccgctggtgttcaagctg
catgccgcgctcggcgtggaactgccgctggcctcggtgttcgccgcaccgaccctggcc
gcgcaggcgcgtcgcatcgacgagctgctgtcgggcgaagcggtcgacgaattcgatctg
gccgcgcaggtccagctcgccgacgagattcatccacgcaacgccacattgccggccgca
tcgcgcgccaacccgcgctcggccttcatcaccggcgccaccggtttcctcggcgcctac
atggtgcgcgagctgctcgacgtgagcagcgccgaagtcgtctgcctggtgcgcgccgcc
gatgccgacgaaggcgtcgcgcgcattcgcgccaatctgcaaggctacggcttgtggcgt
agcggcgacgaagcgcgtctggcgatcgtgctcggcgacctcgcccaaccgcgaatgggc
ctggacgaagccgcgttcgatgcgctcgcgcagcgcgccgaggtgatcttccacaacggc
ggccaggtcaatttcctcgcgccgtatcagcatctggaagcggccaatgtcggcggcacc
cgcgaagtgctgcggctggcgaccttgcaccggatcaagccggtgcatctggtctccacc
ctcggcgtatgcctgaccgcgtcgaatctcgaccgcaccgtgttcgaatccgatccgccg
ccgagcgccgacgaacaatacggcggctacaaccagagcaaatgggtcggcgagcaactg
gccctggtcgcgcgcgaacgcggcctgccggtggcgatctaccggccggcgcggatcacc
ggcgacagccacaccggcgccagcaatctgggcgattacttcaacgcctggctcaagggc
tgcgtgcagatgggccgcgcgccgcatctgcccaacgaagccttcgacatggcgccggtg
gactacgtcggccgctcgatcgtgcgcatcgcgctcggcgcgggcgacgccaacggcaac
ttccatttctacaaccgccgccgcctgccgatcccgaccgcggtggcgaccttgcgcgaa
gccgggttggcgctggaggaaatcgactatcagcaatggcggcgcgaactgctcgcgcac
gccgcggtctcgcgcgacaacgcgctggcgccgttcgccggtttgttcccggccaatccc
gatccgcgcgaacccagcttcgattgcagcgcggtcacgcgcgcggtcgagccgctgggc
ttgatctgtccgccggccgacgcggccttgctgcgtctgtacgtgcgcttcctgcaatcg
cgcgatttctttcccgcgaacacgaaggcgatcgcggaggtgagcgcatga
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