Lysobacter capsici: LC55x_4993
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Entry
LC55x_4993 CDS
T04162
Name
(GenBank) RHS repeat-associated core domain protein
Organism
lcp
Lysobacter capsici
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
CarboxypepD_reg
Kelch_4
Kelch_KLHDC2_KLHL20_DRC7
TTR_TEN1-4
MetallophosN
SoxE_N
UPF0257
Big_5
CooC_C
Motif
Other DBs
NCBI-ProteinID:
ALN88240
LinkDB
All DBs
Position
complement(5523140..5528653)
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AA seq
1837 aa
AA seq
DB search
MSTKGISRNQRSSWGRALQGFKPLLAGCMLGLLAAGSASGHADVLAQELRNDARRPDAPF
ALPGGERRVRLADGGQLVLVADGWTLAQWSSANGNRATRSYRLPTQRRNASVTLLPSGRV
LLWGGTDATGQPQRSGLWFDAERKALSAADDLTLSPRAGHTATVLNDGRVLFAGGIEERA
AELWDERANRATALQHNALIGRAGHAARLQADGRVRLVAGVNAAGRPAATELVFDRERGQ
FAMAPSEPAAKTGFAGSLPAHGAADVMPDARLSFWFAQEARMDDLNTANVSLVGPGGAAQ
VRVAPVEGGRLAFVEPVRALFPDSRYTLLIDRVRTQAGAKLPLIAIDFKTAAIDAEGRRL
PEAATDNAAGDSARAVTGAGDHAAPCAQSPLAYLPCRKHGELKDAVWTPGQDNTDNRWRI
YGPSLEAQSSPRIARIASLYQLTVIRGRVLRIDQQPVADVEVSVGRSVARTDANGWFNLF
DVPAGHQELYVDGGTANRGAEQYGQFVVGVQVKPGQLNELPYLMHLPKISERDKIRITSP
LRRDLVVGHPDIPGLELHIPKGTVIHDRKGRLVTELAIVPTPVNRAPFPVMENHPMAFTV
EPGAAQIRGLSPDANNGIRVYYPNYDGQRPGTEANFWIYDPTEGWRVYGQGFVSADGKHV
VPEQGVALHQTMGGMFSIPGLNGPSERYAAEQCGQCRDTTAPGGDKPAVTGDPIDLKTGE
FLHSETDIGIADIVPLTLERSYRPNDLKKREFGIGTSWNWGYTLNRPNADYNVLELIQPN
GTAVRFDRISGSGNQGEWRQTGSNTQFGGATLRTVFDSDPTQPWGRAFRIRLDDGSQLQF
SSWNDIRLRWVEDAYGNRTTVVYDAGLMKRIVSPSGRTLDLEYDTSNRIQAAVDHTGRRW
SYVYDTNGLLKDVVYPDNKAKHYAYQVRLQGGQVQQHRIESMTDRRGHRVFLNEFEIVNG
LSTGRVIRQTLADDTQIQINYNHVDNGVVGTLVTEADGSRHRYVFDPNTPYLLSETTAYG
TALAQTYTYQRNAYGQLIATVDPLLRRTQIDYDSAGRIEKVTALAGTSQARSSRMGYSTD
GRLSWVADDLDRKTKLEYTGACLTKATDPLGRSAELVCDQAGLLRKVIDPLGHATTLDYD
GYELAAVVDAIGRRIEYKYDALGRRVSVRDAEGNTVRTEYDVLDRPLKVFDASGRQVMGY
VYDENGNVLAIQVVNGNGITYTYDKRDRVETRVDALGQTERWTYHPGGRVETFVDRKNQT
TAYTYDVSGRPSVITYHDGSTTTSTYDLGDRLRVLADSQAGSLSWDFNDQDQLVAAGTAQ
GNITYAYDTAGQRSEMSAAGQAKVEYRYDDVDRLRRIMRGSEEVSFDYDDADRLTQTGLP
NGIKAGYAYDNANQLTGLAWTRPNGSVLGDLGYGYDTIGRLIAQTGSFSSASLSPASVGS
SSFDDSNRKVEHRGATQTFDANGNLTSDGNRTYVWNVRDQLTQIVEGGSVVASFSYDPMG
RRISRTELGGTTTYLYDGSNAVQEVKAGQVNPILTGLAVDQRFARNDTTGRTYFLADQIG
STRALTDAVGAVVQRYDYTPYGEVTQSSAAFDNPYQYTGRELDASGLMFYRARYYAPEQA
RFLSEDSYGFGAGDPNFYAYAGGDPLGTVDPSGHHPILVGLVLAMRIVQVVLFVHSAYQT
YQVLTSPCSTRNEKFLAIGEMALSAAGGHVLTKLTKKFAEFVSLRRAMNLRDKLVADLAP
KGWDGPPAVIGAFSKKTYKVTAQEACTKLCAEDNAALALGLTRGSKDIGFTKAIRPRDGA
HIPACSNCQRDYPAGAFQKGTVMDTRTSKKTKIWPDE
NT seq
5514 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgaaaggaatcagtcgcaaccagcgttcgtcatggggccgcgccttgcagggg
ttcaagccgctgctcgcgggctgcatgctgggcttgctcgcggcgggaagcgcatcggga
cacgccgacgtgctggcgcaggagctgcgtaacgacgcccgtcgccccgacgcgccgttc
gcgctgcccggcggcgaacgccgcgtgcgcctggccgacggcggacagttggtgctggtg
gcggacggatggacgctggctcaatggtccagcgcgaacggcaatcgcgccacgcgcagc
tatcgcctgccgactcagcgtcgcaacgccagcgtgaccctgttacccagcggacgcgtc
ctgctgtggggcggcaccgacgcaacgggtcaaccgcagcgcagcggcttgtggttcgat
gccgaacgcaaggccttgagcgccgccgacgatctgaccttgtcgccgcgcgcgggccac
accgcgacggtgctcaacgacggtcgcgtgctgttcgccggcggcatcgaggagcgtgcc
gccgagttgtgggacgagcgcgccaatcgcgccaccgcgttgcagcacaacgcgctgatc
ggccgcgccggccatgccgcgcgcctgcaggccgatggccgcgtgcgcctggttgcgggc
gtcaatgcagccggccgtccggcggcgaccgaactggtgttcgatcgcgaacgcggccaa
ttcgcgatggccccgagcgaacccgcggcgaagaccggcttcgctggatcgctgccggcg
catggtgcggcggacgtcatgccggacgcgcgcctgtcgttctggttcgcgcaggaagcg
cgcatggacgacttgaacaccgccaacgtcagtctggtcgggcccggcggcgcggcgcag
gtgcgggtggcgccggtcgagggcggccgcctcgccttcgtcgaaccggtgcgcgccttg
ttcccggattcgcgctacaccttgttgatagatcgcgtgcgtacccaggccggcgcgaag
ctgccgctgatcgcgatcgacttcaagactgcggcgatcgacgccgaaggtcggcgtttg
ccggaggcggccacggacaacgcggccggcgacagcgcgcgcgcggtcaccggcgcgggc
gatcatgcagcgccgtgcgcgcagtcgccgctggcctatctgccttgccgcaagcacggt
gaactcaaggacgcggtgtggacaccgggtcaggacaacaccgataaccggtggcgcatc
tacggcccgagcctggaagcgcagagcagcccgcgcatcgcccggatcgcttcgctctat
cagctgacggtgatccgcggccgcgtgctgcgcatcgaccagcaaccggtcgccgacgtc
gaagtcagcgtcggccgctcggtcgcgcgcaccgacgccaatggttggttcaacctgttc
gacgtgccggccggacatcaggaactctatgtcgatggcggcaccgccaatcgcggcgcg
gagcaatacggccagttcgtggtcggcgtgcaggtcaagcccggacagttgaacgaactg
ccgtacctgatgcacctgccgaagatcagcgaacgcgacaagatccgcatcacctcgccg
ctgcgccgggacctggtggtcggtcacccggacatcccgggcctggaactgcacatcccc
aaaggcacggtgatccacgaccgcaagggtcgcctggtcaccgaattggcgatcgtgccc
accccggtgaaccgcgcgccgttcccggtgatggaaaaccatccgatggcgttcaccgtc
gagcccggcgccgcgcagatccgcggcctgtcgcccgatgcgaacaacggcatccgcgtc
tactaccccaactacgacggacaacgccccggcaccgaagccaacttctggatctacgac
ccgaccgaaggctggcgcgtctacggccagggtttcgtttcggccgacggtaagcacgtc
gtgcccgaacagggcgtggcgttgcatcagacgatgggagggatgttcagcattcctggg
ttgaatggcccatcggaacgttacgcggccgaacaatgcggccagtgccgcgacacaacc
gcgccgggcggcgacaagccggcggtcaccggcgacccgatcgacctcaagaccggtgag
ttcctgcattcggaaaccgacatcggcattgccgacatcgtgccgctgacgctcgagcgc
agctatcgtcccaacgatctgaaaaaacgcgaattcggcatcggcaccagttggaattgg
ggctacacgttgaatcgtccgaacgcggactacaacgtgctcgaactgatccagcccaac
ggcacggcggtgcgtttcgaccggatatccggcagcggcaatcaaggcgagtggcggcag
accggctccaacacgcaattcggcggcgccaccctgcgcacggtgttcgattccgatccg
acccagccatggggtcgcgcgttccgcatccggcttgacgatggttctcagctgcagttt
tcgagctggaacgatatccgtcttcgctgggtcgaagacgcctacggaaatcgcaccacg
gtggtctacgacgcgggtttgatgaagcgcatcgtatcgcccagcggacgtaccctcgat
ctcgaatacgacaccagcaatcgcattcaagccgcggtcgaccacaccggccgtcgctgg
agctatgtttacgacacgaacggcctgctcaaggacgtcgtctatcccgacaacaaggcc
aagcactacgcgtaccaggtacgcctgcagggcggtcaagtccagcagcatcgcatcgag
tcgatgaccgaccggcgcggtcaccgtgtgttcctcaatgagttcgaaatcgtcaacggc
ctgtccaccgggcgggttatccggcagaccttggcggacgatactcagatccagatcaac
tacaaccacgtcgataacggtgtggtcggcacgctggtcaccgaggcggatggctcccgc
caccgatacgttttcgatccgaatactccgtatcttctttccgagacaactgcctatggc
acggcgttggcgcagacctacacgtatcaacgcaacgcctacggacaattgatcgcgacg
gtcgacccgcttttgcggcgaacccagatcgattacgacagtgcagggcggatcgagaaa
gtaaccgcgctcgccgggacctcgcaggcgagaagttcgcgcatgggatacagcacggac
ggccgcctgtcctgggtggccgacgatctggatcggaaaaccaagctcgagtataccggc
gcgtgtctgaccaaggcgaccgaccctctggggaggagcgcggagctggtctgcgatcaa
gccggactgctgcgaaaagtcatcgatccgttggggcacgcgaccacgctcgactacgac
ggctatgaactcgctgcggtcgtcgatgcaatcggacgcaggatcgaatacaagtacgac
gcgctcggtcggcgtgtatcggtcagggatgcggaaggcaatacggttcgcaccgagtac
gacgtcctggatcgcccgctgaaggttttcgatgcttcgggtcgtcaagtcatgggttac
gtctatgacgaaaacggcaacgtcctggccattcaagtggtcaacggaaacggcatcacc
tatacctacgacaagcgcgaccgcgtggagacgcgggtcgacgcgttggggcagaccgaa
cgctggacctatcatccgggcggtcgcgtcgagaccttcgtcgacaggaagaatcagacc
accgcgtatacctacgacgtctcgggacggccgagtgtcattacgtatcacgacggaagc
accactacctccacctacgatctcggcgatcggctgcgggtgttggccgatagccaggct
ggctcgttgagttgggatttcaacgatcaagatcaactggttgccgccggcaccgcgcag
ggaaacatcacctacgcttacgataccgccggacaacgcagcgagatgtcggcggcgggt
caggccaaagtcgagtaccgttacgacgacgtcgaccgcttgcgtcgcatcatgcgaggc
agcgaggaagtatcgttcgattacgacgatgcggatcgcctgacccagaccggcctgccc
aacgggataaaggctggctacgcttacgacaacgccaaccaacttaccggcctcgcctgg
accaggccgaacggttcggttctgggcgatcttggctatggctacgatacgattggtcgc
ctgatcgcgcagaccggaagtttttccagcgcgtctttgtccccggcgtccgtcggcagc
agcagcttcgacgacagcaatcgcaaggtcgagcatcgcggggcgacccagaccttcgat
gccaatggaaacctgaccagcgacggtaaccggacgtatgtctggaatgtccgcgaccag
ctgacgcagatcgttgagggcggaagcgtcgtcgccagcttctcctacgaccccatggga
cgccggatttctcgcaccgaactgggcggcacgactacttatctgtacgacggctccaat
gccgtgcaggaagtgaaagccgggcaagtcaatccgatcctgacgggtctggcggtcgat
cagcgtttcgcgcgaaacgatacgaccgggcgaacctatttcttggcggatcagatagga
agcactcgggcgctgaccgacgccgtgggcgcagtggtgcagcgttacgactacacgcca
tacggtgaagtaacccagtcttcggcggccttcgataacccgtaccagtacaccgggcgc
gaactcgatgccagcggcttgatgttctacagggcgcggtactacgcgcccgagcaagcg
cgcttcctgagcgaagactcgtatggattcggcgcgggagatccgaatttctacgcctat
gccggcggcgatcccctggggaccgtcgatccatcggggcaccatccgatattggtcggc
ctggtgctggccatgcgcatcgtgcaggtcgtgctgtttgtgcattcggcctatcagacc
taccaggtcctcaccagcccctgcagcaccagaaacgagaaatttctggccataggcgag
atggcgttgtcggcggccggcggtcatgtgctgaccaagctgaccaagaaattcgcggaa
ttcgtttcattgaggcgggccatgaatctgcgcgataagctcgttgcggatctcgcgccc
aagggctgggacggaccgcccgcggtcatcggggccttcagcaagaaaacttataaagta
acggcccaggaggcgtgtaccaagctgtgcgcggaggacaacgcggcgctcgcgctgggt
ttgacccgcggttcgaaggacatcgggttcaccaaggcgataagaccccgcgacggagcg
catattccagcatgcagcaactgccagagggattacccggcgggcgcttttcaaaagggc
acggtgatggacacccggacgtcgaaaaagacaaaaatatggcccgacgaatga
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